RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 PRPHP41219 470 aa15.59■□□□□ 0.09
USP48-213ENST00000529637 CDK17Q00537 523 aa15.59■□□□□ 0.09
USP48-213ENST00000529637 CFAP221Q4G0U5 840 aa15.59■□□□□ 0.09
USP48-213ENST00000529637 ANKRD20A8PQ5CZ79 823 aa15.59■□□□□ 0.09
USP48-213ENST00000529637 PRR5LQ6MZQ0 368 aa15.59■□□□□ 0.09
USP48-213ENST00000529637 CNNM4Q6P4Q7 775 aa15.59■□□□□ 0.09
USP48-213ENST00000529637 C16orf86Q6ZW13 317 aa15.59■□□□□ 0.09
USP48-213ENST00000529637 DDX42Q86XP3 938 aaKnown RBP eCLIP15.59■□□□□ 0.09
USP48-213ENST00000529637 BCCIPQ9P287 314 aaKnown RBP eCLIP15.59■□□□□ 0.09
USP48-213ENST00000529637 CNOT8Q9UFF9 292 aaKnown RBP15.59■□□□□ 0.09
USP48-213ENST00000529637 GCFC2P16383 781 aaKnown RBP15.59■□□□□ 0.09
USP48-213ENST00000529637 ACCSLQ4AC99 568 aa15.59■□□□□ 0.09
USP48-213ENST00000529637 DPP8Q6V1X1 898 aaPredicted RBP15.59■□□□□ 0.09
USP48-213ENST00000529637 CD302Q8IX05 232 aa15.59■□□□□ 0.09
USP48-213ENST00000529637 KLHL7Q8IXQ5 586 aa15.59■□□□□ 0.09
USP48-213ENST00000529637 SNX29Q8TEQ0 813 aa15.59■□□□□ 0.09
USP48-213ENST00000529637 NOC3LQ8WTT2 800 aaKnown RBP15.59■□□□□ 0.09
USP48-213ENST00000529637 GMNCA6NCL1 334 aa15.58■□□□□ 0.09
USP48-213ENST00000529637 RAD51CO43502 376 aa15.58■□□□□ 0.09
USP48-213ENST00000529637 PLCB4Q15147 1175 aa15.58■□□□□ 0.09
USP48-213ENST00000529637 LRRC41Q15345 812 aa15.58■□□□□ 0.09
USP48-213ENST00000529637 GJA10Q969M2 543 aa15.58■□□□□ 0.09
USP48-213ENST00000529637 ZNF622Q969S3 477 aaKnown RBP eCLIP15.58■□□□□ 0.092e-9■■□□□ 13.8
USP48-213ENST00000529637 ERGIC2Q96RQ1 377 aa15.58■□□□□ 0.09
USP48-213ENST00000529637 CUEDC2Q9H467 287 aa15.58■□□□□ 0.09
USP48-213ENST00000529637 TMBIM4Q9HC24 238 aa15.58■□□□□ 0.09
USP48-213ENST00000529637 CCDC88AQ3V6T2 1871 aa15.58■□□□□ 0.09
USP48-213ENST00000529637 ADCY7P51828 1080 aa15.58■□□□□ 0.08
USP48-213ENST00000529637 UBE2SQ16763 222 aa15.58■□□□□ 0.08
USP48-213ENST00000529637 PTPROQ16827 1216 aa15.58■□□□□ 0.08
USP48-213ENST00000529637 SLC12A6Q9UHW9 1150 aa15.58■□□□□ 0.08
USP48-213ENST00000529637 PHF20L1A8MW92 1017 aa15.58■□□□□ 0.08
USP48-213ENST00000529637 HMGB1P1B2RPK0 211 aaPredicted RBP15.58■□□□□ 0.08
USP48-213ENST00000529637 SCTRP47872 440 aa15.58■□□□□ 0.08
USP48-213ENST00000529637 UAP1Q16222 522 aaPredicted RBP15.58■□□□□ 0.08
USP48-213ENST00000529637 TMED8Q6PL24 325 aaPredicted RBP15.58■□□□□ 0.08
USP48-213ENST00000529637 SLF2Q8IX21 1173 aa15.58■□□□□ 0.08
USP48-213ENST00000529637 SGSM3Q96HU1 749 aa15.58■□□□□ 0.08
USP48-213ENST00000529637 SIK3Q9Y2K2 1263 aa15.58■□□□□ 0.08
USP48-213ENST00000529637 GPR75-ASB3A0A0A6YYF3 556 aa15.57■□□□□ 0.08
USP48-213ENST00000529637 PALMO75781 387 aa15.57■□□□□ 0.08
USP48-213ENST00000529637 SLC16A2P36021 539 aa15.57■□□□□ 0.08
USP48-213ENST00000529637 HSD17B3P37058 310 aa15.57■□□□□ 0.08
USP48-213ENST00000529637 GLE1Q53GS7 698 aaKnown RBP15.57■□□□□ 0.08
USP48-213ENST00000529637 ZSCAN29Q8IWY8 852 aaPredicted RBP15.57■□□□□ 0.08
USP48-213ENST00000529637 MREGQ8N565 214 aa15.57■□□□□ 0.08
USP48-213ENST00000529637 TBC1D31Q96DN5 1066 aa15.57■□□□□ 0.08
USP48-213ENST00000529637 SEC16BQ96JE7 1060 aa15.57■□□□□ 0.08
USP48-213ENST00000529637 TACO1Q9BSH4 297 aaKnown RBP15.57■□□□□ 0.08
USP48-213ENST00000529637 ZHX3Q9H4I2 956 aa15.57■□□□□ 0.08
USP48-213ENST00000529637 USP21Q9UK80 565 aa15.57■□□□□ 0.08
USP48-213ENST00000529637 WNK3Q9BYP7 1800 aa15.57■□□□□ 0.08
USP48-213ENST00000529637 A0A1W2PQJ5 194 aa15.57■□□□□ 0.08
USP48-213ENST00000529637 G3V3G9 751 aa15.57■□□□□ 0.08
USP48-213ENST00000529637 TRAPPC3O43617 180 aa15.57■□□□□ 0.08
USP48-213ENST00000529637 SLC37A4O43826 429 aa15.57■□□□□ 0.08
USP48-213ENST00000529637 HNRNPH3P31942 346 aaKnown RBP15.57■□□□□ 0.08
USP48-213ENST00000529637 CLNS1AP54105 237 aaKnown RBP15.57■□□□□ 0.08
USP48-213ENST00000529637 HLTFQ14527 1009 aaKnown RBP eCLIP15.57■□□□□ 0.083e-6■■■□□ 17.5
USP48-213ENST00000529637 CDC37Q16543 378 aaPredicted RBP15.57■□□□□ 0.08
USP48-213ENST00000529637 DCAF8Q5TAQ9 597 aa15.57■□□□□ 0.08
USP48-213ENST00000529637 KRT79Q5XKE5 535 aa15.57■□□□□ 0.08
USP48-213ENST00000529637 RAB34Q9BZG1 259 aa15.57■□□□□ 0.08
USP48-213ENST00000529637 TBC1D7Q9P0N9 293 aa15.57■□□□□ 0.08
USP48-213ENST00000529637 LCA5LO95447 670 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 ATP2B4P23634 1241 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 FLT3P36888 993 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 MRPL12P52815 198 aaKnown RBP15.56■□□□□ 0.08
USP48-213ENST00000529637 ERVK-9P63128 1117 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 VPS72Q15906 364 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 NAIF1Q69YI7 327 aaPredicted RBP15.56■□□□□ 0.08
USP48-213ENST00000529637 PPP4R3AQ6IN85 833 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 LARP4BQ92615 738 aaKnown RBP15.56■□□□□ 0.08
USP48-213ENST00000529637 NEUROG2Q9H2A3 272 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 MAGEF1Q9HAY2 307 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 IRS2Q9Y4H2 1338 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 AHDC1Q5TGY3 1603 aaPredicted RBP15.56■□□□□ 0.08
USP48-213ENST00000529637 MYMKA6NI61 221 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 H0YGN5 161 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 AKR1B1P15121 316 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 ECHS1P30084 290 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 EHHADHQ08426 723 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 TLDC1Q6P9B6 456 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 KIAA0895Q8NCT3 520 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 NOX5Q96PH1 765 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 C7orf25Q9BPX7 421 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 MMTAG2Q9BU76 263 aaKnown RBP15.56■□□□□ 0.08
USP48-213ENST00000529637 SEMA6BQ9H3T3 888 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 KCNG1Q9UIX4 513 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 NFS1Q9Y697 457 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 ROBO3Q96MS0 1386 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 SERPINB2P05120 415 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 SCNN1DP51172 638 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 SATB1Q01826 763 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 ENOX2Q16206 610 aaKnown RBP15.56■□□□□ 0.08
USP48-213ENST00000529637 FIGNQ5HY92 759 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 RBM17Q96I25 401 aaKnown RBP15.56■□□□□ 0.08
USP48-213ENST00000529637 GOLPH3Q9H4A6 298 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 GGA2Q9UJY4 613 aa15.56■□□□□ 0.08
USP48-213ENST00000529637 ZNF844Q08AG5 666 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms