RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 FOSP01100 380 aaPredicted RBP11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 NEFLP07196 543 aa11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 CA3P07451 260 aa11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 SCG2P13521 617 aa11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 PDIA3P30101 505 aaKnown RBP11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 WDR5P61964 334 aaKnown RBP11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 DEFB103AP81534 67 aa11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 ITGB3BPQ13352 177 aaPredicted RBP11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 MKRN4PQ13434 485 aaPredicted RBP11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 JAKMIP3Q5VZ66 844 aa11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 SPRED2Q7Z698 418 aa11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 ZNF713Q8N859 430 aaPredicted RBP11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 GIMAP8Q8ND71 665 aaPredicted RBP11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 PHOSPHO2Q8TCD6 241 aa11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 LMBR1Q8WVP7 490 aa11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 CRYGNQ8WXF5 182 aa11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 SEPT1Q8WYJ6 367 aa11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 CDHR1Q96JP9 859 aa11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 SLC9A7Q96T83 725 aa11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 LARP6Q9BRS8 491 aaKnown RBP11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 NCOA5Q9HCD5 579 aaKnown RBP11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 PPP4R2Q9NY27 417 aa11.94□□□□□ -0.5
PRPF40B-204ENST00000527253 A0A0C4DFX4 3053 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 CCDC196A0A1B0GTZ2 297 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 EPOPA6NHQ4 379 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 RSPH10B2B2RC85 870 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 RFXAPO00287 272 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 DLL1O00548 723 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 MAFGO15525 162 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 EPB41L2O43491 1005 aaKnown RBP11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 EDIL3O43854 480 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 LGR5O75473 907 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 BAIAP3O94812 1187 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 PARNO95453 639 aaKnown RBP11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 RSPH10BP0C881 870 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 PSMA5P28066 241 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 SREBF1P36956 1147 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 CCT2P78371 535 aaKnown RBP11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 ARHGAP4P98171 946 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 CEP55Q53EZ4 464 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 MARCH8Q5T0T0 291 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 CNKSR3Q6P9H4 555 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 RUFY4Q6ZNE9 571 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 RUFY3Q7L099 469 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 ZBTB10Q96DT7 871 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 ZMYND12Q9H0C1 365 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 AGO4Q9HCK5 861 aaKnown RBP11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 PRDM6Q9NQX0 595 aa11.93□□□□□ -0.5
PRPF40B-204ENST00000527253 CHD7Q9P2D1 2997 aa11.92□□□□□ -0.5
PRPF40B-204ENST00000527253 ESYT2A0FGR8 921 aa11.92□□□□□ -0.5
PRPF40B-204ENST00000527253 LCHNA4D1U4 455 aa11.92□□□□□ -0.5
PRPF40B-204ENST00000527253 FAM86B1E9PN63 330 aa11.92□□□□□ -0.5
PRPF40B-204ENST00000527253 FAM86B2P0C5J1 330 aa11.92□□□□□ -0.5
PRPF40B-204ENST00000527253 MARK3P27448 753 aa11.92□□□□□ -0.5
PRPF40B-204ENST00000527253 TAP1Q03518 808 aa11.92□□□□□ -0.5
PRPF40B-204ENST00000527253 AP3B2Q13367 1082 aa11.92□□□□□ -0.5
PRPF40B-204ENST00000527253 PPP2R2DQ66LE6 453 aa11.92□□□□□ -0.5
PRPF40B-204ENST00000527253 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.92□□□□□ -0.5
PRPF40B-204ENST00000527253 TEX2Q8IWB9 1127 aa11.92□□□□□ -0.5
PRPF40B-204ENST00000527253 DBF4BQ8NFT6 615 aa11.92□□□□□ -0.5
PRPF40B-204ENST00000527253 UIMC1Q96RL1 719 aa11.92□□□□□ -0.5
PRPF40B-204ENST00000527253 UPF3BQ9BZI7 483 aaKnown RBP11.92□□□□□ -0.5
PRPF40B-204ENST00000527253 EHMT1Q9H9B1 1298 aa11.92□□□□□ -0.5
PRPF40B-204ENST00000527253 CERS4Q9HA82 394 aa11.92□□□□□ -0.5
PRPF40B-204ENST00000527253 JPH1Q9HDC5 661 aaPredicted RBP11.92□□□□□ -0.5
PRPF40B-204ENST00000527253 SLC9A2Q9UBY0 812 aa11.92□□□□□ -0.5
PRPF40B-204ENST00000527253 ZNF215Q9UL58 517 aaPredicted RBP11.92□□□□□ -0.5
PRPF40B-204ENST00000527253 NFASCO94856 1347 aa11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 NRCAMQ92823 1304 aa11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 TTC28Q96AY4 2481 aa11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 IGLV3-22A0A075B6J6 115 aa11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 ABHD14A-ACY1A0A1B0GW23 586 aa11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 DHX15O43143 795 aaKnown RBP11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 CCNE2O96020 404 aa11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 CHRNA1P02708 482 aa11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 CYP3A4P08684 503 aa11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 CTSHP09668 335 aa11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 IFNAR1P17181 557 aa11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 ACTR2P61160 394 aa11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 PLEKHG4Q58EX7 1191 aa11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 FAM26DQ5JW98 314 aa11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 RASGRP4Q8TDF6 673 aa11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 PPM1EQ8WY54 764 aa11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 GAS2L1Q99501 681 aaPredicted RBP11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 SLC26A6Q9BXS9 759 aa11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 TM6SF1Q9BZW5 370 aa11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 GLT8D2Q9H1C3 349 aa11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 SMARCAD1Q9H4L7 1026 aa11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 PRRC2BQ5JSZ5 2229 aaKnown RBP11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 KAT6AQ92794 2004 aa11.91□□□□□ -0.5
PRPF40B-204ENST00000527253 EMSYQ7Z589 1322 aa11.9□□□□□ -0.5
PRPF40B-204ENST00000527253 MBLAC1A4D2B0 266 aaPredicted RBP11.9□□□□□ -0.5
PRPF40B-204ENST00000527253 ATG7O95352 703 aa11.9□□□□□ -0.5
PRPF40B-204ENST00000527253 GNAT1P11488 350 aa11.9□□□□□ -0.5
PRPF40B-204ENST00000527253 IGFBP4P22692 258 aa11.9□□□□□ -0.5
PRPF40B-204ENST00000527253 KCNJ6P48051 423 aa11.9□□□□□ -0.5
PRPF40B-204ENST00000527253 MGAT3Q09327 533 aa11.9□□□□□ -0.5
PRPF40B-204ENST00000527253 PPFIA1Q13136 1202 aa11.9□□□□□ -0.5
PRPF40B-204ENST00000527253 IKBKEQ14164 716 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms