RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 KCNA6P17658 529 aa6.94□□□□□ -1.3
CD44-223ENST00000526553 GJA4P35212 333 aa6.94□□□□□ -1.3
CD44-223ENST00000526553 IGFALSP35858 605 aa6.94□□□□□ -1.3
CD44-223ENST00000526553 JAM2P57087 298 aa6.94□□□□□ -1.3
CD44-223ENST00000526553 SMAD4Q13485 552 aaKnown RBP6.94□□□□□ -1.3
CD44-223ENST00000526553 VMACQ2NL98 169 aa6.94□□□□□ -1.3
CD44-223ENST00000526553 HHIPL2Q6UWX4 724 aa6.94□□□□□ -1.3
CD44-223ENST00000526553 TTLL7Q6ZT98 887 aa6.94□□□□□ -1.3
CD44-223ENST00000526553 C16orf86Q6ZW13 317 aa6.94□□□□□ -1.3
CD44-223ENST00000526553 PROSER1Q86XN7 944 aa6.94□□□□□ -1.3
CD44-223ENST00000526553 PTRH1Q86Y79 214 aaKnown RBP6.94□□□□□ -1.3
CD44-223ENST00000526553 MARCH10Q8NA82 808 aaPredicted RBP6.94□□□□□ -1.3
CD44-223ENST00000526553 KCNC2Q96PR1 638 aa6.94□□□□□ -1.3
CD44-223ENST00000526553 FANCLQ9NW38 375 aa6.94□□□□□ -1.3
CD44-223ENST00000526553 COQ6Q9Y2Z9 468 aa6.94□□□□□ -1.3
CD44-223ENST00000526553 ATP23Q9Y6H3 246 aa6.94□□□□□ -1.3
CD44-223ENST00000526553 CLASP2O75122 1294 aaKnown RBP6.93□□□□□ -1.3
CD44-223ENST00000526553 CDC45O75419 566 aa6.93□□□□□ -1.3
CD44-223ENST00000526553 DNAJC8O75937 253 aaPredicted RBP6.93□□□□□ -1.3
CD44-223ENST00000526553 ASLP04424 464 aa6.93□□□□□ -1.3
CD44-223ENST00000526553 KRT15P19012 456 aa6.93□□□□□ -1.3
CD44-223ENST00000526553 RPL13P26373 211 aaKnown RBP6.93□□□□□ -1.3
CD44-223ENST00000526553 PABPC4Q13310 644 aaKnown RBP eCLIP6.93□□□□□ -1.3
CD44-223ENST00000526553 FBLN7Q53RD9 439 aa6.93□□□□□ -1.3
CD44-223ENST00000526553 PRR31Q5SQ13 230 aa6.93□□□□□ -1.3
CD44-223ENST00000526553 VASNQ6EMK4 673 aa6.93□□□□□ -1.3
CD44-223ENST00000526553 ABHD17CQ6PCB6 329 aa6.93□□□□□ -1.3
CD44-223ENST00000526553 OVCH1Q7RTY7 1134 aa6.93□□□□□ -1.3
CD44-223ENST00000526553 CARFQ8N187 725 aa6.93□□□□□ -1.3
CD44-223ENST00000526553 CISD2Q8N5K1 135 aaKnown RBP6.93□□□□□ -1.3
CD44-223ENST00000526553 CLIC6Q96NY7 704 aa6.93□□□□□ -1.3
CD44-223ENST00000526553 WASF3Q9UPY6 502 aa6.93□□□□□ -1.3
CD44-223ENST00000526553 BTBD11A6QL63 1104 aa6.92□□□□□ -1.3
CD44-223ENST00000526553 ACOT7O00154 380 aa6.92□□□□□ -1.3
CD44-223ENST00000526553 ENPP3O14638 875 aa6.92□□□□□ -1.3
CD44-223ENST00000526553 PTPN1P18031 435 aaKnown RBP6.92□□□□□ -1.3
CD44-223ENST00000526553 SLURP1P55000 103 aa6.92□□□□□ -1.3
CD44-223ENST00000526553 TMEM177Q53S58 311 aa6.92□□□□□ -1.3
CD44-223ENST00000526553 BTBD8Q5XKL5 378 aa6.92□□□□□ -1.3
CD44-223ENST00000526553 CD276Q5ZPR3 534 aa6.92□□□□□ -1.3
CD44-223ENST00000526553 ZCCHC8Q6NZY4 707 aaKnown RBP6.92□□□□□ -1.3
CD44-223ENST00000526553 EP400NLQ6ZTU2 488 aa6.92□□□□□ -1.3
CD44-223ENST00000526553 DDX53Q86TM3 631 aaKnown RBP6.92□□□□□ -1.3
CD44-223ENST00000526553 STK32CQ86UX6 486 aa6.92□□□□□ -1.3
CD44-223ENST00000526553 IGSF22Q8N9C0 903 aa6.92□□□□□ -1.3
CD44-223ENST00000526553 DTX3Q8N9I9 347 aa6.92□□□□□ -1.3
CD44-223ENST00000526553 DLL4Q9NR61 685 aa6.92□□□□□ -1.3
CD44-223ENST00000526553 INTS7Q9NVH2 962 aaKnown RBP6.92□□□□□ -1.3
CD44-223ENST00000526553 MAGEC2Q9UBF1 373 aaPredicted RBP6.92□□□□□ -1.3
CD44-223ENST00000526553 TBX22Q9Y458 520 aa6.92□□□□□ -1.3
CD44-223ENST00000526553 A0A1B0GTL3 188 aa6.91□□□□□ -1.3
CD44-223ENST00000526553 FAM90A27PA6NNH2 459 aa6.91□□□□□ -1.3
CD44-223ENST00000526553 OPA1O60313 960 aa6.91□□□□□ -1.3
CD44-223ENST00000526553 CYP7B1O75881 506 aa6.91□□□□□ -1.3
CD44-223ENST00000526553 BMP7P18075 431 aa6.91□□□□□ -1.3
CD44-223ENST00000526553 SARSP49591 514 aaKnown RBP6.91□□□□□ -1.3
CD44-223ENST00000526553 TMC5Q6UXY8 1006 aa6.91□□□□□ -1.3
CD44-223ENST00000526553 NOSTRINQ8IVI9 506 aa6.91□□□□□ -1.3
CD44-223ENST00000526553 ADGRG2Q8IZP9 1017 aa6.91□□□□□ -1.3
CD44-223ENST00000526553 RIC8BQ9NVN3 520 aa6.91□□□□□ -1.3
CD44-223ENST00000526553 RBPJLQ9UBG7 517 aa6.91□□□□□ -1.3
CD44-223ENST00000526553 RAPGEFL1Q9UHV5 662 aa6.91□□□□□ -1.3
CD44-223ENST00000526553 CD2APQ9Y5K6 639 aa6.91□□□□□ -1.3
CD44-223ENST00000526553 TNPO3Q9Y5L0 923 aaKnown RBP6.91□□□□□ -1.3
CD44-223ENST00000526553 SASH1O94885 1247 aa6.9□□□□□ -1.3
CD44-223ENST00000526553 ENO2P09104 434 aaPredicted RBP6.9□□□□□ -1.3
CD44-223ENST00000526553 SDSP20132 328 aa6.9□□□□□ -1.3
CD44-223ENST00000526553 KCNC1P48547 511 aa6.9□□□□□ -1.3
CD44-223ENST00000526553 TKFCQ3LXA3 575 aa6.9□□□□□ -1.3
CD44-223ENST00000526553 ZSWIM3Q96MP5 696 aa6.9□□□□□ -1.3
CD44-223ENST00000526553 FEZ1Q99689 392 aa6.9□□□□□ -1.3
CD44-223ENST00000526553 PARD6AQ9NPB6 346 aa6.9□□□□□ -1.3
CD44-223ENST00000526553 SLC12A8A0AV02 714 aa6.89□□□□□ -1.31
CD44-223ENST00000526553 ZNF839A8K0R7 811 aa6.89□□□□□ -1.31
CD44-223ENST00000526553 C4BPAP04003 597 aaKnown RBP6.89□□□□□ -1.31
CD44-223ENST00000526553 ZNF28P17035 718 aa6.89□□□□□ -1.31
CD44-223ENST00000526553 FLT3P36888 993 aa6.89□□□□□ -1.31
CD44-223ENST00000526553 MECP2P51608 486 aaKnown RBP6.89□□□□□ -1.31
CD44-223ENST00000526553 HERVK_113P62684 666 aa6.89□□□□□ -1.31
CD44-223ENST00000526553 DBPQ10586 325 aaPredicted RBP6.89□□□□□ -1.31
CD44-223ENST00000526553 ZNF460Q14592 562 aa6.89□□□□□ -1.31
CD44-223ENST00000526553 RTP5Q14D33 572 aa6.89□□□□□ -1.31
CD44-223ENST00000526553 FAM26FQ5R3K3 315 aa6.89□□□□□ -1.31
CD44-223ENST00000526553 OTOP1Q7RTM1 612 aa6.89□□□□□ -1.31
CD44-223ENST00000526553 KIAA0907Q7Z7F0 614 aaPredicted RBP6.89□□□□□ -1.31
CD44-223ENST00000526553 ADAMTS17Q8TE56 1095 aa6.89□□□□□ -1.31
CD44-223ENST00000526553 NINJ1Q92982 152 aa6.89□□□□□ -1.31
CD44-223ENST00000526553 SPATA25Q9BR10 227 aa6.89□□□□□ -1.31
CD44-223ENST00000526553 ZCCHC4Q9H5U6 513 aa6.89□□□□□ -1.31
CD44-223ENST00000526553 SAMD15Q9P1V8 674 aa6.89□□□□□ -1.31
CD44-223ENST00000526553 PLAAQ9Y263 795 aa6.89□□□□□ -1.31
CD44-223ENST00000526553 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.88□□□□□ -1.31
CD44-223ENST00000526553 KCNK3O14649 394 aa6.88□□□□□ -1.31
CD44-223ENST00000526553 GLRX3O76003 335 aaKnown RBP6.88□□□□□ -1.31
CD44-223ENST00000526553 INHBBP09529 407 aa6.88□□□□□ -1.31
CD44-223ENST00000526553 PFKPQ01813 784 aa6.88□□□□□ -1.31
CD44-223ENST00000526553 ARHGAP44Q17R89 818 aa6.88□□□□□ -1.31
CD44-223ENST00000526553 SKIDA1Q1XH10 827 aa6.88□□□□□ -1.31
CD44-223ENST00000526553 TTLL10Q6ZVT0 673 aa6.88□□□□□ -1.31
CD44-223ENST00000526553 ZNF761Q86XN6 746 aaPredicted RBP6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms