RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 FGD4Q96M96 766 aa8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 ZSWIM6Q9HCJ5 1215 aa8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 IGFBP4P22692 258 aa8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 TXKP42681 527 aa8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 MAGEA10P43363 369 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 ARHGAP4P98171 946 aa8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 PSMD2Q13200 908 aa8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 CCDC85BQ15834 202 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 TMEM266Q2M3C6 531 aa8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 NOC3LQ8WTT2 800 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 C8orf76Q96K31 380 aa8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 PAK6Q9NQU5 681 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 RBM27Q9P2N5 1060 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 CNTNAP5Q8WYK1 1306 aa8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 PHIPQ8WWQ0 1821 aa8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 COL2A1P02458 1487 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 SDK1Q7Z5N4 2213 aa8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 B4DLN1 442 aa8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 SNHG28P0DPA3 235 aa8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 RINLQ6ZS11 566 aa8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 SPC24Q8NBT2 197 aa8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 ZBED2Q9BTP6 218 aa8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 CFHR5Q9BXR6 569 aa8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 CXorf56Q9H5V9 222 aa8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 SUDS3Q9H7L9 328 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 RNF19AQ9NV58 838 aa8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 G3BP2Q9UN86 482 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 ADAMTS5Q9UNA0 930 aa8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 SMC3Q9UQE7 1217 aa8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 UBA1P22314 1058 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 MCM4P33991 863 aa8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 THPOP40225 353 aa8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 MRPS9P82933 396 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 MYOCDQ8IZQ8 938 aa8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 OTUD6BQ8N6M0 293 aa8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 NUCKS1Q9H1E3 243 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 ZHX3Q9H4I2 956 aa8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 RIOX1Q9H6W3 641 aa8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 HDAC6Q9UBN7 1215 aa8.86□□□□□ -0.99
LIMCH1-219ENST00000514096 MEIS2O14770 477 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 PTPRFP10586 1907 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 XBP1P17861 261 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 C9orf50Q5SZB4 431 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 SWSAP1Q6NVH7 229 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 USP6NLQ92738 828 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 ZNF577Q9BSK1 485 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 AZI2Q9H6S1 392 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 MEIS1O00470 390 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 ITGB8P26012 769 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 SAFBQ15424 915 aaKnown RBP eCLIP8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 SPECC1Q5M775 1068 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 NCAPH2Q6IBW4 605 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 ANKRD20A12PQ8NF67 263 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 CCDC34Q96HJ3 373 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 HIPK3Q9H422 1215 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 LIMCH1Q9UPQ0 1083 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 ITGB5P18084 799 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 TCF7P36402 384 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 TAPT1Q6NXT6 567 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 BTNL9Q6UXG8 535 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 CCDC91Q7Z6B0 441 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 DIS3L2Q8IYB7 885 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 LRRC71Q8N4P6 559 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 KCNH7Q9NS40 1196 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 MAST2Q6P0Q8 1798 aa8.85□□□□□ -0.99
LIMCH1-219ENST00000514096 ZMYM6O95789 1325 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 STXBP3O00186 592 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 DUSP11O75319 330 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 EIF3JO75822 258 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 GH1P01241 217 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 RABGGTBP53611 331 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 SLC39A5Q6ZMH5 540 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 RNF214Q8ND24 703 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 ATP6V0A1Q93050 837 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 CHD7Q9P2D1 2997 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 H3BRB1 525 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 GAS7O60861 476 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 FDX1P10109 184 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 PAX3P23760 479 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 GNA11P29992 359 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 PTGISQ16647 500 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 EARS2Q5JPH6 523 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 PDXDC2PQ6P474 469 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 SGMS1Q86VZ5 419 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 PCSK9Q8NBP7 692 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 TUT1Q9H6E5 874 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 JRKLQ9Y4A0 524 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 MYH6P13533 1939 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 DNAJC25-GNG10A0A024R161 153 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 FAM86B1E9PN63 330 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 TRIM66O15016 1216 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 MSCO60682 206 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 RGS20O76081 388 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 FAM86B2P0C5J1 330 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 FGFR4P22455 802 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 GJB2P29033 226 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 OAZ1P54368 228 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 HNRNPH2P55795 449 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 FAM109BQ6ICB4 259 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 MNS1Q8NEH6 495 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms