RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 NDE1Q9NXR1 346 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 NEURL4Q96JN8 1562 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 ZFYVE9O95405 1425 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 ERVV-2B6SEH9 535 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 XRCC5P13010 732 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 UBXN2AP68543 259 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 PDCLQ13371 301 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 DRP2Q13474 957 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 ADCK5Q3MIX3 580 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 HP1BP3Q5SSJ5 553 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 SYT2Q8N9I0 419 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 ZNF274Q96GC6 653 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 STX18Q9P2W9 335 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 ADGRB3O60242 1522 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 DDX39AO00148 427 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 H2AFZP0C0S5 128 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 HSPA8P11142 646 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 DEFA1P59665 94 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 DEFA3P59666 94 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 AP2B1P63010 937 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 H2AFVQ71UI9 128 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 KIAA0825Q8IV33 1275 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 CDAN1Q8IWY9 1227 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 B4GALNT2Q8NHY0 566 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 GSDMAQ96QA5 445 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 SIKE1Q9BRV8 207 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 SYBUQ9NX95 663 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 TTLL3Q9Y4R7 772 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 GMEB1Q9Y692 573 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 ADGRB1O14514 1584 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 H0Y626 953 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 DIAPH2O60879 1101 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 MMEP08473 750 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 IL13P35225 146 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 ATP6V1E1P36543 226 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 ATG16L1Q676U5 607 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 ICA1LQ8NDH6 482 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 CFAP36Q96G28 342 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 KCNH4Q9UQ05 1017 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 TRAF3IP3Q9Y228 551 aa9.4□□□□□ -0.9
LIMCH1-218ENST00000513024 PFKFB2O60825 505 aa9.4□□□□□ -0.91
LIMCH1-218ENST00000513024 NUGGCQ68CJ6 796 aa9.4□□□□□ -0.91
LIMCH1-218ENST00000513024 GADL1Q6ZQY3 521 aa9.4□□□□□ -0.91
LIMCH1-218ENST00000513024 RETREG2Q8NC44 543 aa9.4□□□□□ -0.91
LIMCH1-218ENST00000513024 TRIM63Q969Q1 353 aa9.4□□□□□ -0.91
LIMCH1-218ENST00000513024 OPTNQ96CV9 577 aa9.4□□□□□ -0.91
LIMCH1-218ENST00000513024 TRIM11Q96F44 468 aa9.4□□□□□ -0.91
LIMCH1-218ENST00000513024 CLMNQ96JQ2 1002 aa9.4□□□□□ -0.91
LIMCH1-218ENST00000513024 METTL22Q9BUU2 404 aaPredicted RBP9.4□□□□□ -0.91
LIMCH1-218ENST00000513024 SPTLC3Q9NUV7 552 aa9.4□□□□□ -0.91
LIMCH1-218ENST00000513024 DKK3Q9UBP4 350 aa9.4□□□□□ -0.91
LIMCH1-218ENST00000513024 NOVA2Q9UNW9 492 aaKnown RBP9.4□□□□□ -0.91
LIMCH1-218ENST00000513024 ZNF532Q9HCE3 1301 aa9.4□□□□□ -0.91
LIMCH1-218ENST00000513024 PNPLA6Q8IY17 1366 aa9.4□□□□□ -0.91
LIMCH1-218ENST00000513024 STK25O00506 426 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 RNMTO43148 476 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 COPB1P53618 953 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 NAA30Q147X3 362 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 ARID5BQ14865 1188 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 ERFEQ4G0M1 354 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 DPP9Q86TI2 863 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 ZNF483Q8TF39 744 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 RNF34Q969K3 372 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 CNBD2Q96M20 576 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 NUDCD1Q96RS6 583 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 DSCC1Q9BVC3 393 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 ABCB6Q9NP58 842 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 ATP8A1Q9Y2Q0 1164 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 TMA7Q9Y2S6 64 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 POC1B-GALNT4F8VUJ3 575 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 TAF5LO75529 589 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 GSTA1P08263 222 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 GSTA2P09210 222 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 CYP2C19P33261 490 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 EIF3BP55884 814 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 RBL2Q08999 1139 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 LLGL1Q15334 1064 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 TRIM16LQ309B1 348 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 TMEM154Q6P9G4 183 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 MYOCDQ8IZQ8 938 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 TEKT4Q8WW24 435 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 SLC39A2Q9NP94 309 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 ETAA1Q9NY74 926 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 ARMCX3Q9UH62 379 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 ARHGAP26Q9UNA1 814 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 CHMP2BQ9UQN3 213 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 MAP3K19Q56UN5 1328 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 SERPINB4P48594 390 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 CYP2J2P51589 502 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 ADCY7P51828 1080 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 ART3Q13508 389 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 CLEC17AQ6ZS10 378 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 SMYD4Q8IYR2 804 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 ZNF654Q8IZM8 581 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 TMEM2Q9UHN6 1383 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 ZMYND8Q9ULU4 1186 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 PTPN22Q9Y2R2 807 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 DEPDC5O75140 1603 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 GRK2P25098 689 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 MAP4P27816 1152 aaKnown RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms