RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 ADCY8P40145 1251 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 IRAK1P51617 712 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 DR1Q01658 176 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 DOK7Q18PE1 504 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 SBK1Q52WX2 424 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 FAM212AQ96EL1 285 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 ATP6V1G3Q96LB4 118 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 PPP1R1BQ9UD71 204 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 DUSP10Q9Y6W6 482 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 RIMS1Q86UR5 1692 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 EIF3HO15372 352 aaKnown RBP eCLIP9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 TRIM37O94972 964 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 GUCY1A3Q02108 690 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 LRRC31Q6UY01 552 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 MMGT1Q8N4V1 131 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 NEK9Q8TD19 979 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 ANO3Q9BYT9 981 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 LACRTQ9GZZ8 138 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 DDX47Q9H0S4 455 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 TAF1DQ9H5J8 278 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 RBM12Q9NTZ6 932 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 KLHL14Q9P2G3 628 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 LARSQ9P2J5 1176 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 NWD1Q149M9 1564 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 SLCO1A2P46721 670 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 EIF3BP55884 814 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 MXRA7P84157 204 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 E2F5Q15329 346 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 UAP1Q16222 522 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 MIER3Q7Z3K6 550 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 TBC1D31Q96DN5 1066 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 RUNDC3BQ96NL0 473 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 NBPF3Q9H094 633 aa9.15□□□□□ -0.94
LIMCH1-216ENST00000512820 A0A1W2PQJ5 194 aa9.15□□□□□ -0.95
LIMCH1-216ENST00000512820 POTEB3A0JP26 581 aa9.15□□□□□ -0.95
LIMCH1-216ENST00000512820 MYMKA6NI61 221 aa9.15□□□□□ -0.95
LIMCH1-216ENST00000512820 POTECB2RU33 542 aa9.15□□□□□ -0.95
LIMCH1-216ENST00000512820 BACH1O14867 736 aa9.15□□□□□ -0.95
LIMCH1-216ENST00000512820 HERVK_113P62684 666 aa9.15□□□□□ -0.95
LIMCH1-216ENST00000512820 GRAPQ13588 217 aa9.15□□□□□ -0.95
LIMCH1-216ENST00000512820 HHATQ5VTY9 493 aa9.15□□□□□ -0.95
LIMCH1-216ENST00000512820 POTEBQ6S5H4 581 aa9.15□□□□□ -0.95
LIMCH1-216ENST00000512820 NLRP14Q86W24 1093 aa9.15□□□□□ -0.95
LIMCH1-216ENST00000512820 GRAPLQ8TC17 118 aaPredicted RBP9.15□□□□□ -0.95
LIMCH1-216ENST00000512820 ERGIC2Q96RQ1 377 aa9.15□□□□□ -0.95
LIMCH1-216ENST00000512820 SPZ1Q9BXG8 430 aa9.15□□□□□ -0.95
LIMCH1-216ENST00000512820 BHMT2Q9H2M3 363 aa9.15□□□□□ -0.95
LIMCH1-216ENST00000512820 THRAP3Q9Y2W1 955 aaKnown RBP9.15□□□□□ -0.95
LIMCH1-216ENST00000512820 SSU72P8A0A1W2PR75 194 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 STXBP3O00186 592 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 THAP12O43422 761 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 PLEKP08567 350 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 POLR2MP0CAP2 368 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 ATP2A2P16615 1042 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 PCK1P35558 622 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 LRCH2Q5VUJ6 765 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 PAPD7Q5XG87 772 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 TCP11Q8WWU5 503 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 TACO1Q9BSH4 297 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 ZMYND12Q9H0C1 365 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 POLD4Q9HCU8 107 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 MYCLP12524 364 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 LLGL1Q15334 1064 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 FYB2Q5VWT5 728 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 SFR1Q86XK3 245 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 KIAA0825Q8IV33 1275 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 NEDD1Q8NHV4 660 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 CCDC127Q96BQ5 260 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 CEP83Q9Y592 693 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 C3P01024 1663 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 A0A0U1RQJ8 604 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 GMNCA6NCL1 334 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 SFI1A8K8P3 1242 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 USP17L15C9J2P7 530 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 USP17L13C9JLJ4 530 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 USP17L11C9JVI0 530 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 USP17L18D6R9N7 530 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 USP17L22D6RA61 530 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 USP17L17D6RBQ6 530 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 USP17L19D6RCP7 530 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 USP17L20D6RJB6 530 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 CAMTA2O94983 1202 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 USP17L24Q0WX57 530 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 TBC1D9BQ66K14 1250 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 USP17L6PQ6QN14 398 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 HARSP12081 509 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 CORO7P57737 925 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 MAGOHP61326 146 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 TTI2Q6NXR4 508 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 CCDC13Q8IYE1 715 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 CPXCR1Q8N123 301 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 IWS1Q96ST2 819 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 AGTPBP1Q9UPW5 1226 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 DLG5Q8TDM6 1919 aa9.14□□□□□ -0.95
LIMCH1-216ENST00000512820 PPP1R37O75864 691 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 SUN1O94901 812 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 PDE6CP51160 858 aa9.13□□□□□ -0.95
LIMCH1-216ENST00000512820 SLC18A3Q16572 532 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms