RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ARL10Q8N8L6 244 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 TDRD7Q8NHU6 1098 aaKnown RBP3.86□□□□□ -1.79
USP53-205ENST00000509769 IFT122Q9HBG6 1241 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 KRT84Q9NSB2 600 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 SPTLC3Q9NUV7 552 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 FHOD1Q9Y613 1164 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 RREB1Q92766 1687 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 CFAP69A5D8W1 941 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 POTECB2RU33 542 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 CCDC188H7C350 402 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 PHACTR2O75167 634 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 CALM1P0DP23 149 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 CALM2P0DP24 149 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 CALM3P0DP25 149 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 IL12AP29459 219 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 MYO1EQ12965 1108 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 SPIDRQ14159 915 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 TBC1D1Q86TI0 1168 aaPredicted RBP3.85□□□□□ -1.79
USP53-205ENST00000509769 NDUFAF2Q8N183 169 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 SUN5Q8TC36 379 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 BLOC1S5Q8TDH9 187 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 OTUD5Q96G74 571 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 DHTKD1Q96HY7 919 aaPredicted RBP3.85□□□□□ -1.79
USP53-205ENST00000509769 NHEJ1Q9H9Q4 299 aaPredicted RBP3.85□□□□□ -1.79
USP53-205ENST00000509769 CACNA2D2Q9NY47 1150 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 CCDC59Q9P031 241 aaKnown RBP3.85□□□□□ -1.79
USP53-205ENST00000509769 ZFATQ9P243 1243 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 CCPG1Q9ULG6 757 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 PRELID1Q9Y255 219 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 KLHL20Q9Y2M5 609 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 SH3GLB1Q9Y371 365 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 COMMD3-BMI1R4GMX3 469 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 IL16Q14005 1332 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 SSH2Q76I76 1423 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 NBPF26B4DH59 902 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 VWA5AO00534 786 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 SULT1B1O43704 296 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 POTEIP0CG38 1075 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 GHRP10912 638 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 IMPDH2P12268 514 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 CALML3P27482 149 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 MAP4P27816 1152 aaKnown RBP3.85□□□□□ -1.79
USP53-205ENST00000509769 VHLP40337 213 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 RGS2P41220 211 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 STAT1P42224 750 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 QARSP47897 775 aaKnown RBP3.85□□□□□ -1.79
USP53-205ENST00000509769 ATXN3P54252 364 aaPredicted RBP3.85□□□□□ -1.79
USP53-205ENST00000509769 RRS1Q15050 365 aaKnown RBP3.85□□□□□ -1.79
USP53-205ENST00000509769 RGS21Q2M5E4 152 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 TMED8Q6PL24 325 aaPredicted RBP3.85□□□□□ -1.79
USP53-205ENST00000509769 KRT28Q7Z3Y7 464 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 STK32CQ86UX6 486 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 CAB39LQ9H9S4 337 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 PPANQ9NQ55 473 aaKnown RBP3.85□□□□□ -1.79
USP53-205ENST00000509769 USP40Q9NVE5 1235 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 GGA2Q9UJY4 613 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 ATXN2Q99700 1313 aaKnown RBP3.85□□□□□ -1.79
USP53-205ENST00000509769 GLI3P10071 1580 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 GTPBP10A4D1E9 387 aaKnown RBP3.85□□□□□ -1.79
USP53-205ENST00000509769 H0Y3Z8 333 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 KLHL18O94889 574 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 WDR47O94967 919 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 KRT14P02533 472 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 NR1D1P20393 614 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 CDC27P30260 824 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 PRIM1P49642 420 aaKnown RBP3.85□□□□□ -1.79
USP53-205ENST00000509769 NLRP12P59046 1061 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 DLG4P78352 724 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 BFSP2Q13515 415 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 ITGA9Q13797 1035 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 IQCB1Q15051 598 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 RPS6KA2Q15349 733 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 FAM98CQ17RN3 349 aaKnown RBP3.85□□□□□ -1.79
USP53-205ENST00000509769 METTL24Q5JXM2 366 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 SYT2Q8N9I0 419 aaPredicted RBP3.85□□□□□ -1.79
USP53-205ENST00000509769 CLHC1Q8NHS4 586 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 S100ZQ8WXG8 99 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 ARHGAP45Q92619 1136 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 VPS50Q96JG6 964 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 TTC25Q96NG3 672 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 CCT7Q99832 543 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 GLT8D2Q9H1C3 349 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 MAGEF1Q9HAY2 307 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 DMAP1Q9NPF5 467 aaPredicted RBP3.85□□□□□ -1.79
USP53-205ENST00000509769 HDAC6Q9UBN7 1215 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 PUF60Q9UHX1 559 aaKnown RBP3.85□□□□□ -1.79
USP53-205ENST00000509769 SOS1Q07889 1333 aaPredicted RBP3.85□□□□□ -1.79
USP53-205ENST00000509769 ZC3H4Q9UPT8 1303 aaKnown RBP3.85□□□□□ -1.79
USP53-205ENST00000509769 CEP152O94986 1710 aa3.85□□□□□ -1.79
USP53-205ENST00000509769 SMIM31A0A1B0GVY4 71 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 SNTNA6NMZ2 147 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 MATN2O00339 956 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 PCNAP12004 261 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 TEFQ10587 303 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 FAPQ12884 760 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 TP53BP2Q13625 1128 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 TSTA3Q13630 321 aaPredicted RBP3.84□□□□□ -1.79
USP53-205ENST00000509769 TTF1Q15361 905 aaPredicted RBP3.84□□□□□ -1.79
USP53-205ENST00000509769 TSHZ1Q6ZSZ6 1077 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 BNIPLQ7Z465 357 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms