RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 RASSF10A6NK89 507 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 E9PMD0 336 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 CETN3O15182 167 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 SPDYE6P0CI01 402 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 EPS15P42566 896 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 SPIRE1Q08AE8 756 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 GPS2Q13227 327 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 DLGAP5Q15398 846 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 USH1GQ495M9 461 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 PAPD7Q5XG87 772 aaKnown RBP13.24□□□□□ -0.29
NUP54-202ENST00000502850 NCAPH2Q6IBW4 605 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 SYT2Q8N9I0 419 aaPredicted RBP13.24□□□□□ -0.29
NUP54-202ENST00000502850 SECISBP2LQ93073 1101 aaKnown RBP13.24□□□□□ -0.29
NUP54-202ENST00000502850 ALS2CR12Q96Q35 445 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 PURBQ96QR8 312 aaKnown RBP13.24□□□□□ -0.29
NUP54-202ENST00000502850 PARD6BQ9BYG5 372 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 EMILIN3Q9NT22 766 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 RAB21Q9UL25 225 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 PRR12Q9ULL5 1215 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 PCDHA2Q9Y5H9 948 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 PCDHAC2Q9Y5I4 1007 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 SAR1BQ9Y6B6 198 aa13.24□□□□□ -0.29
NUP54-202ENST00000502850 A0A0U1RQJ8 604 aa13.23□□□□□ -0.29
NUP54-202ENST00000502850 CALUO43852 315 aaPredicted RBP13.23□□□□□ -0.29
NUP54-202ENST00000502850 TBC1D12O60347 775 aa13.23□□□□□ -0.29
NUP54-202ENST00000502850 TACC1O75410 805 aa13.23□□□□□ -0.29
NUP54-202ENST00000502850 MED24O75448 989 aa13.23□□□□□ -0.29
NUP54-202ENST00000502850 GAP43P17677 238 aa13.23□□□□□ -0.29
NUP54-202ENST00000502850 KLK7P49862 253 aa13.23□□□□□ -0.29
NUP54-202ENST00000502850 MAPK8IP2Q13387 824 aaPredicted RBP13.23□□□□□ -0.29
NUP54-202ENST00000502850 PDXDC1Q6P996 788 aa13.23□□□□□ -0.29
NUP54-202ENST00000502850 RBM46Q8TBY0 533 aaKnown RBP13.23□□□□□ -0.29
NUP54-202ENST00000502850 ATRIPQ8WXE1 791 aa13.23□□□□□ -0.29
NUP54-202ENST00000502850 PRMT6Q96LA8 375 aaPredicted RBP13.23□□□□□ -0.29
NUP54-202ENST00000502850 IFIH1Q9BYX4 1025 aaKnown RBP13.23□□□□□ -0.29
NUP54-202ENST00000502850 TUFT1Q9NNX1 390 aa13.23□□□□□ -0.29
NUP54-202ENST00000502850 FAM207AQ9NSI2 230 aaPredicted RBP13.23□□□□□ -0.29
NUP54-202ENST00000502850 PUF60Q9UHX1 559 aaKnown RBP13.23□□□□□ -0.29
NUP54-202ENST00000502850 MRPL11Q9Y3B7 192 aaKnown RBP13.23□□□□□ -0.29
NUP54-202ENST00000502850 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.23□□□□□ -0.29
NUP54-202ENST00000502850 LTBP3Q9NS15 1303 aa13.23□□□□□ -0.29
NUP54-202ENST00000502850 GCOM1H8Y6P7 765 aaPredicted RBP13.22□□□□□ -0.29
NUP54-202ENST00000502850 AKR1B10O60218 316 aa13.22□□□□□ -0.29
NUP54-202ENST00000502850 TBCAO75347 108 aaKnown RBP13.22□□□□□ -0.29
NUP54-202ENST00000502850 POLR2MP0CAP2 368 aa13.22□□□□□ -0.29
NUP54-202ENST00000502850 ZSCAN20P17040 1043 aaPredicted RBP13.22□□□□□ -0.29
NUP54-202ENST00000502850 KIF11P52732 1056 aa13.22□□□□□ -0.29
NUP54-202ENST00000502850 SETQ01105 290 aaPredicted RBP13.22□□□□□ -0.29
NUP54-202ENST00000502850 LRRC41Q15345 812 aa13.22□□□□□ -0.29
NUP54-202ENST00000502850 SLC9C1Q4G0N8 1177 aa13.22□□□□□ -0.29
NUP54-202ENST00000502850 CATSPER3Q86XQ3 398 aa13.22□□□□□ -0.29
NUP54-202ENST00000502850 TRIM59Q8IWR1 403 aa13.22□□□□□ -0.29
NUP54-202ENST00000502850 MSL3Q8N5Y2 521 aaKnown RBP13.22□□□□□ -0.29
NUP54-202ENST00000502850 LENG9Q96B70 501 aa13.22□□□□□ -0.29
NUP54-202ENST00000502850 TAOK3Q9H2K8 898 aa13.22□□□□□ -0.29
NUP54-202ENST00000502850 KCTD10Q9H3F6 313 aa13.22□□□□□ -0.29
NUP54-202ENST00000502850 ZBTB21Q9ULJ3 1066 aa13.22□□□□□ -0.29
NUP54-202ENST00000502850 POTEFA5A3E0 1075 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 YDJCA8MPS7 323 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 SLC16A3O15427 465 aaKnown RBP13.21□□□□□ -0.29
NUP54-202ENST00000502850 EYA4O95677 639 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 POTEIP0CG38 1075 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 RPL13P26373 211 aaKnown RBP13.21□□□□□ -0.29
NUP54-202ENST00000502850 BMT2Q1RMZ1 405 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 SPDYE2Q495Y8 402 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 CCDC70Q6NSX1 233 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 DPY19L2Q6NUT2 758 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 POTEGQ6S5H5 508 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 POTEEQ6S8J3 1075 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 RRAGAQ7L523 313 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 FRMD5Q7Z6J6 570 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 FAM83AQ86UY5 434 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 CCDC155Q8N6L0 562 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 MTMR14Q8NCE2 650 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 SCFD1Q8WVM8 642 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 EEF2KMTQ96G04 330 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 RANBP17Q9H2T7 1088 aaKnown RBP13.21□□□□□ -0.29
NUP54-202ENST00000502850 METTL14Q9HCE5 456 aaKnown RBP13.21□□□□□ -0.29
NUP54-202ENST00000502850 ZNF70Q9UC06 446 aaPredicted RBP13.21□□□□□ -0.29
NUP54-202ENST00000502850 TSKSQ9UJT2 592 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 VAV3Q9UKW4 847 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 TRAF3IP3Q9Y228 551 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 JRKLQ9Y4A0 524 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 UBE4BO95155 1302 aa13.21□□□□□ -0.29
NUP54-202ENST00000502850 LRRC53A6NM62 1247 aa13.21□□□□□ -0.3
NUP54-202ENST00000502850 FAM86B1E9PN63 330 aa13.21□□□□□ -0.3
NUP54-202ENST00000502850 PDXKO00764 312 aa13.21□□□□□ -0.3
NUP54-202ENST00000502850 MSH4O15457 936 aa13.21□□□□□ -0.3
NUP54-202ENST00000502850 PJA2O43164 708 aa13.21□□□□□ -0.3
NUP54-202ENST00000502850 EIF3JO75822 258 aaKnown RBP13.21□□□□□ -0.3
NUP54-202ENST00000502850 SERPING1P05155 500 aa13.21□□□□□ -0.3
NUP54-202ENST00000502850 VIL1P09327 827 aaKnown RBP13.21□□□□□ -0.3
NUP54-202ENST00000502850 FAM86B2P0C5J1 330 aa13.21□□□□□ -0.3
NUP54-202ENST00000502850 STAT3P40763 770 aa13.21□□□□□ -0.3
NUP54-202ENST00000502850 GIT2Q14161 759 aa13.21□□□□□ -0.3
NUP54-202ENST00000502850 SHROOM1Q2M3G4 852 aaPredicted RBP13.21□□□□□ -0.3
NUP54-202ENST00000502850 MAP9Q49MG5 647 aa13.21□□□□□ -0.3
NUP54-202ENST00000502850 SFMBT2Q5VUG0 894 aa13.21□□□□□ -0.3
NUP54-202ENST00000502850 STXBP4Q6ZWJ1 553 aa13.21□□□□□ -0.3
NUP54-202ENST00000502850 KRT26Q7Z3Y9 468 aa13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms