RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 VPS39Q96JC1 886 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 ZFYVE19Q96K21 471 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 ARMC7Q9H6L4 198 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 ANKRD6Q9Y2G4 727 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 KDM4AO75164 1064 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 MYBL2P10244 700 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 CYP19A1P11511 503 aaPredicted RBP6.28□□□□□ -1.4
USF3-204ENST00000496826 PDE6CP51160 858 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 PABPC4Q13310 644 aaKnown RBP eCLIP6.28□□□□□ -1.4
USF3-204ENST00000496826 RPS6KA1Q15418 735 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 KNOP1Q1ED39 458 aaKnown RBP6.28□□□□□ -1.4
USF3-204ENST00000496826 WASHC2DQ5SRD0 308 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 NXNQ6DKJ4 435 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 CALML6Q8TD86 181 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 TRIM47Q96LD4 638 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 DDX28Q9NUL7 540 aaKnown RBP6.28□□□□□ -1.4
USF3-204ENST00000496826 STK17AQ9UEE5 414 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 SPACA6W5XKT8 324 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 A0A087WUV0 522 aaPredicted RBP6.28□□□□□ -1.4
USF3-204ENST00000496826 TRIM38O00635 465 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 STAT5AP42229 794 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 STAT5BP51692 787 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 NANOGNBQ7Z5D8 188 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 CNBD1Q8NA66 436 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 CAPSLQ8WWF8 208 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 DDX17Q92841 729 aaKnown RBP6.28□□□□□ -1.4
USF3-204ENST00000496826 TNIP3Q96KP6 325 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 ZNF556Q9HAH1 456 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 B2RBV5 119 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 SYT1P21579 422 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 COPAP53621 1224 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 UVSSAQ2YD98 709 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 RNF219Q5W0B1 726 aaPredicted RBP6.28□□□□□ -1.4
USF3-204ENST00000496826 PARP9Q8IXQ6 854 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 PHB2Q99623 299 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 KIFC1Q9BW19 673 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 KLHL4Q9C0H6 718 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 CAPN11Q9UMQ6 739 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 USP47Q96K76 1375 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 CARMIL2Q6F5E8 1435 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 COPB2P35606 906 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 SYKP43405 635 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 SKP1P63208 163 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 CABLES1Q8TDN4 633 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 OTUD5Q96G74 571 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 ANKRD36BP1Q96IX9 119 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 CCT8L2Q96SF2 557 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 ANO3Q9BYT9 981 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 AKAP7Q9P0M2 348 aaPredicted RBP6.28□□□□□ -1.4
USF3-204ENST00000496826 NDUFAB1O14561 156 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 H2AFYO75367 372 aaKnown RBP6.27□□□□□ -1.41
USF3-204ENST00000496826 LAMB3Q13751 1172 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 MEA1Q16626 185 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 KRT39Q6A163 491 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 DGKHQ86XP1 1220 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 PCDH10Q9P2E7 1040 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 G3V2T6 193 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 CALUO43852 315 aaPredicted RBP6.27□□□□□ -1.41
USF3-204ENST00000496826 PLIN1O60240 522 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 TRPA1O75762 1119 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 SLC5A1P13866 664 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 TRIM27P14373 513 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 HMOX2P30519 316 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 TAB1Q15750 504 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 MREGQ8N565 214 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 TESCQ96BS2 214 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 TMEM237Q96Q45 408 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 FAM129BQ96TA1 746 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 LSG1Q9H089 658 aaKnown RBP6.27□□□□□ -1.41
USF3-204ENST00000496826 HAUS4Q9H6D7 363 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 SETD4Q9NVD3 440 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 PIGBOS1A0A0B4J2F0 54 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 ARHGEF35A5YM69 484 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 ABCB1P08183 1280 aaPredicted RBP6.27□□□□□ -1.41
USF3-204ENST00000496826 TMED10P49755 219 aaKnown RBP6.27□□□□□ -1.41
USF3-204ENST00000496826 ADKP55263 362 aaKnown RBP6.27□□□□□ -1.41
USF3-204ENST00000496826 RSAD2Q8WXG1 361 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 MRFAP1L1Q96HT8 127 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 PLEKHA8Q96JA3 519 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 KLC2Q9H0B6 622 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 LYNP07948 512 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 TBX2Q13207 712 aaPredicted RBP6.27□□□□□ -1.41
USF3-204ENST00000496826 ATP13A5Q4VNC0 1218 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 FAM47EQ6ZV65 393 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 RBBP8Q99708 897 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 TACO1Q9BSH4 297 aaKnown RBP6.27□□□□□ -1.41
USF3-204ENST00000496826 SEMA6CQ9H3T2 930 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 UBN1Q9NPG3 1134 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 PHLPP2Q6ZVD8 1323 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 KCNH2Q12809 1159 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 PPHLN1Q8NEY8 458 aaKnown RBP6.27□□□□□ -1.41
USF3-204ENST00000496826 SLC26A7Q8TE54 656 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 CCDC51Q96ER9 411 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 C8orf76Q96K31 380 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 EPB41L5Q9HCM4 733 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 CDH7Q9ULB5 785 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 MINK1Q8N4C8 1332 aaPredicted RBP6.27□□□□□ -1.41
USF3-204ENST00000496826 OPLAHO14841 1288 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 FIBPO43427 364 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 SURF6O75683 361 aaKnown RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms