RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 MAN2A1Q16706 1144 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 VGLL2Q8N8G2 317 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 EIF1ADQ8N9N8 165 aaKnown RBP12.79□□□□□ -0.36
HDAC4-210ENST00000493582 ATXN2LQ8WWM7 1075 aaKnown RBP12.79□□□□□ -0.36
HDAC4-210ENST00000493582 GPKOWQ92917 476 aaPredicted RBP eCLIP12.79□□□□□ -0.36
HDAC4-210ENST00000493582 ISCA1Q9BUE6 129 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 ECT2Q9H8V3 914 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 CNTNAP5Q8WYK1 1306 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 A0A0G2JS52 829 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 HGSO14964 777 aaPredicted RBP12.79□□□□□ -0.36
HDAC4-210ENST00000493582 NMT2O60551 498 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 CCND1P24385 295 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 SLMAPQ14BN4 828 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 TRIM68Q6AZZ1 485 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 KANSL2Q9H9L4 492 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 MYL1P05976 194 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 RAB27AP51159 221 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 POLR2FP61218 127 aaKnown RBP12.79□□□□□ -0.36
HDAC4-210ENST00000493582 IFI35P80217 286 aaPredicted RBP12.79□□□□□ -0.36
HDAC4-210ENST00000493582 GRIPAP1Q4V328 841 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 SFMBT2Q5VUG0 894 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 ARMC3Q5W041 872 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 CENPTQ96BT3 561 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 ADAM7Q9H2U9 754 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 GOPCQ9HD26 462 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 IRAK4Q9NWZ3 460 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 TRIM33Q9UPN9 1127 aa12.79□□□□□ -0.36
HDAC4-210ENST00000493582 CAMTA1Q9Y6Y1 1673 aa12.78□□□□□ -0.36
HDAC4-210ENST00000493582 AFF2P51816 1311 aa12.78□□□□□ -0.36
HDAC4-210ENST00000493582 SEMA3FQ13275 785 aa12.78□□□□□ -0.36
HDAC4-210ENST00000493582 FAM83BQ5T0W9 1011 aa12.78□□□□□ -0.36
HDAC4-210ENST00000493582 CENPPQ6IPU0 288 aa12.78□□□□□ -0.36
HDAC4-210ENST00000493582 CNKSR1Q969H4 720 aa12.78□□□□□ -0.36
HDAC4-210ENST00000493582 KLHL29Q96CT2 875 aa12.78□□□□□ -0.36
HDAC4-210ENST00000493582 MTA3Q9BTC8 594 aa12.78□□□□□ -0.36
HDAC4-210ENST00000493582 INTS9Q9NV88 658 aaKnown RBP12.78□□□□□ -0.36
HDAC4-210ENST00000493582 SCN11AQ9UI33 1791 aa12.78□□□□□ -0.36
HDAC4-210ENST00000493582 LMTK3Q96Q04 1460 aa12.78□□□□□ -0.36
HDAC4-210ENST00000493582 TJP1Q07157 1748 aa12.78□□□□□ -0.36
HDAC4-210ENST00000493582 FER1L4A9Z1Z3 1794 aa12.78□□□□□ -0.36
HDAC4-210ENST00000493582 A6NHS1 94 aa12.78□□□□□ -0.36
HDAC4-210ENST00000493582 SERPING1P05155 500 aa12.78□□□□□ -0.36
HDAC4-210ENST00000493582 UQCRFS1P1P0C7P4 283 aa12.78□□□□□ -0.36
HDAC4-210ENST00000493582 ATP4AP20648 1035 aa12.78□□□□□ -0.36
HDAC4-210ENST00000493582 SLC18A3Q16572 532 aa12.78□□□□□ -0.36
HDAC4-210ENST00000493582 INF2Q27J81 1249 aa12.78□□□□□ -0.36
HDAC4-210ENST00000493582 BLIDQ8IZY5 108 aa12.78□□□□□ -0.36
HDAC4-210ENST00000493582 METTL13Q8N6R0 699 aa12.78□□□□□ -0.36
HDAC4-210ENST00000493582 UHMK1Q8TAS1 419 aaKnown RBP12.78□□□□□ -0.36
HDAC4-210ENST00000493582 OSBPL1AQ9BXW6 950 aa12.78□□□□□ -0.36
HDAC4-210ENST00000493582 NOC2LQ9Y3T9 749 aaKnown RBP12.78□□□□□ -0.36
HDAC4-210ENST00000493582 DPPA5A6NC42 116 aa12.77□□□□□ -0.36
HDAC4-210ENST00000493582 MPHOSPH10O00566 681 aaKnown RBP12.77□□□□□ -0.36
HDAC4-210ENST00000493582 RPS6KA3P51812 740 aa12.77□□□□□ -0.36
HDAC4-210ENST00000493582 TAF11Q15544 211 aa12.77□□□□□ -0.36
HDAC4-210ENST00000493582 TXNRD1Q16881 649 aa12.77□□□□□ -0.36
HDAC4-210ENST00000493582 SLC30A9Q6PML9 568 aa12.77□□□□□ -0.36
HDAC4-210ENST00000493582 ORAI2Q96SN7 254 aa12.77□□□□□ -0.36
HDAC4-210ENST00000493582 TRIM51Q9BSJ1 452 aa12.77□□□□□ -0.36
HDAC4-210ENST00000493582 CCSER1Q9C0I3 900 aa12.77□□□□□ -0.36
HDAC4-210ENST00000493582 ZFATQ9P243 1243 aa12.77□□□□□ -0.36
HDAC4-210ENST00000493582 CHD4Q14839 1912 aa12.77□□□□□ -0.36
HDAC4-210ENST00000493582 NOL4O94818 638 aa12.77□□□□□ -0.37
HDAC4-210ENST00000493582 CTCFP49711 727 aaPredicted RBP12.77□□□□□ -0.37
HDAC4-210ENST00000493582 RAPGEF1Q13905 1077 aa12.77□□□□□ -0.37
HDAC4-210ENST00000493582 CABP7Q86V35 215 aa12.77□□□□□ -0.37
HDAC4-210ENST00000493582 LUC7LQ9NQ29 371 aaKnown RBP12.77□□□□□ -0.37
HDAC4-210ENST00000493582 ADAM22Q9P0K1 906 aa12.77□□□□□ -0.37
HDAC4-210ENST00000493582 PNMA3Q9UL41 463 aa12.77□□□□□ -0.37
HDAC4-210ENST00000493582 ATP6V0A2Q9Y487 856 aa12.77□□□□□ -0.37
HDAC4-210ENST00000493582 PGRMC1O00264 195 aaKnown RBP12.77□□□□□ -0.37
HDAC4-210ENST00000493582 ATP2A2P16615 1042 aaKnown RBP12.77□□□□□ -0.37
HDAC4-210ENST00000493582 GNAT2P19087 354 aa12.77□□□□□ -0.37
HDAC4-210ENST00000493582 MMP13P45452 471 aa12.77□□□□□ -0.37
HDAC4-210ENST00000493582 LRRC41Q15345 812 aa12.77□□□□□ -0.37
HDAC4-210ENST00000493582 DYMQ7RTS9 669 aa12.77□□□□□ -0.37
HDAC4-210ENST00000493582 ADGRA1Q86SQ6 560 aa12.77□□□□□ -0.37
HDAC4-210ENST00000493582 FAM133AQ8N9E0 248 aa12.77□□□□□ -0.37
HDAC4-210ENST00000493582 MAP3K13O43283 966 aa12.76□□□□□ -0.37
HDAC4-210ENST00000493582 FESP07332 822 aa12.76□□□□□ -0.37
HDAC4-210ENST00000493582 USP11P51784 963 aa12.76□□□□□ -0.37
HDAC4-210ENST00000493582 EVX2Q03828 476 aa12.76□□□□□ -0.37
HDAC4-210ENST00000493582 PFKFB3Q16875 520 aaPredicted RBP12.76□□□□□ -0.37
HDAC4-210ENST00000493582 GLIS3Q8NEA6 775 aa12.76□□□□□ -0.37
HDAC4-210ENST00000493582 ACTRT1Q8TDG2 376 aa12.76□□□□□ -0.37
HDAC4-210ENST00000493582 NAF1Q96HR8 494 aaKnown RBP12.76□□□□□ -0.37
HDAC4-210ENST00000493582 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.76□□□□□ -0.372e-7■■□□□ 11.8
HDAC4-210ENST00000493582 CCDC113Q9H0I3 377 aa12.76□□□□□ -0.37
HDAC4-210ENST00000493582 AZI2Q9H6S1 392 aa12.76□□□□□ -0.37
HDAC4-210ENST00000493582 PAPOLBQ9NRJ5 636 aaKnown RBP12.76□□□□□ -0.37
HDAC4-210ENST00000493582 NR2E1Q9Y466 385 aa12.76□□□□□ -0.37
HDAC4-210ENST00000493582 MYH2Q9UKX2 1941 aa12.76□□□□□ -0.37
HDAC4-210ENST00000493582 CCDC194A0A1B0GVG4 234 aa12.76□□□□□ -0.37
HDAC4-210ENST00000493582 BHMG1C9JSJ3 638 aaPredicted RBP12.76□□□□□ -0.37
HDAC4-210ENST00000493582 SMIM24O75264 130 aa12.76□□□□□ -0.37
HDAC4-210ENST00000493582 GNAT1P11488 350 aa12.76□□□□□ -0.37
HDAC4-210ENST00000493582 MSH2P43246 934 aa12.76□□□□□ -0.37
HDAC4-210ENST00000493582 SLCO1A2P46721 670 aa12.76□□□□□ -0.37
HDAC4-210ENST00000493582 PAPOLAP51003 745 aaKnown RBP12.76□□□□□ -0.37
HDAC4-210ENST00000493582 UBAP2Q5T6F2 1119 aaKnown RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms