RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 PPP2CAP67775 309 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 NFATC3Q12968 1075 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 RASGRF1Q13972 1273 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 NAALADL2Q58DX5 795 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 PHF19Q5T6S3 580 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 FOXB2Q5VYV0 432 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 CD276Q5ZPR3 534 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.97□□□□□ -1.61
CPSF3-205ENST00000489629 KBTBD2Q8IY47 623 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 NUDT10Q8NFP7 164 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 IGDCC4Q8TDY8 1250 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 NUDT11Q96G61 164 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 TRIM55Q9BYV6 548 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 CCDC113Q9H0I3 377 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 KCND1Q9NSA2 647 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 FTSJ1Q9UET6 329 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 ADAM29Q9UKF5 820 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 DSEQ9UL01 958 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 TRAF6Q9Y4K3 522 aa4.97□□□□□ -1.61
CPSF3-205ENST00000489629 WNT9AO14904 365 aa4.96□□□□□ -1.62
CPSF3-205ENST00000489629 GPR42O15529 346 aa4.96□□□□□ -1.62
CPSF3-205ENST00000489629 ENO2P09104 434 aaPredicted RBP4.96□□□□□ -1.62
CPSF3-205ENST00000489629 C6orf222P0C671 652 aaPredicted RBP4.96□□□□□ -1.62
CPSF3-205ENST00000489629 PUM1Q14671 1186 aaKnown RBP eCLIP4.96□□□□□ -1.62
CPSF3-205ENST00000489629 SMAD2Q15796 467 aaKnown RBP4.96□□□□□ -1.62
CPSF3-205ENST00000489629 GLB1LQ6UWU2 654 aa4.96□□□□□ -1.62
CPSF3-205ENST00000489629 KCTD1Q719H9 257 aa4.96□□□□□ -1.62
CPSF3-205ENST00000489629 DPH6Q7L8W6 267 aa4.96□□□□□ -1.62
CPSF3-205ENST00000489629 SCUBE1Q8IWY4 988 aa4.96□□□□□ -1.62
CPSF3-205ENST00000489629 CKAP2LQ8IYA6 745 aa4.96□□□□□ -1.62
CPSF3-205ENST00000489629 NUB1Q9Y5A7 615 aa4.96□□□□□ -1.62
CPSF3-205ENST00000489629 ZNF839A8K0R7 811 aa4.95□□□□□ -1.62
CPSF3-205ENST00000489629 E9PSI1 815 aa4.95□□□□□ -1.62
CPSF3-205ENST00000489629 MATN3O15232 486 aa4.95□□□□□ -1.62
CPSF3-205ENST00000489629 IL18BPO95998 194 aa4.95□□□□□ -1.62
CPSF3-205ENST00000489629 TNFRSF1AP19438 455 aa4.95□□□□□ -1.62
CPSF3-205ENST00000489629 PFKPQ01813 784 aa4.95□□□□□ -1.62
CPSF3-205ENST00000489629 CDSNQ15517 529 aa4.95□□□□□ -1.62
CPSF3-205ENST00000489629 SKIDA1Q1XH10 827 aa4.95□□□□□ -1.62
CPSF3-205ENST00000489629 ARHGEF18Q6ZSZ5 1173 aa4.95□□□□□ -1.62
CPSF3-205ENST00000489629 Q6ZUG5 572 aa4.95□□□□□ -1.62
CPSF3-205ENST00000489629 MAMDC2Q7Z304 686 aaPredicted RBP4.95□□□□□ -1.62
CPSF3-205ENST00000489629 ZBTB38Q8NAP3 1195 aaPredicted RBP4.95□□□□□ -1.62
CPSF3-205ENST00000489629 DNERQ8NFT8 737 aa4.95□□□□□ -1.62
CPSF3-205ENST00000489629 AJUBAQ96IF1 538 aa4.95□□□□□ -1.62
CPSF3-205ENST00000489629 PTPN18Q99952 460 aa4.95□□□□□ -1.62
CPSF3-205ENST00000489629 BARX1Q9HBU1 254 aaPredicted RBP4.95□□□□□ -1.62
CPSF3-205ENST00000489629 CD248Q9HCU0 757 aa4.95□□□□□ -1.62
CPSF3-205ENST00000489629 ST6GALNAC2Q9UJ37 374 aa4.95□□□□□ -1.62
CPSF3-205ENST00000489629 ZFP69BQ9UJL9 534 aa4.95□□□□□ -1.62
CPSF3-205ENST00000489629 TRBV23-1A0A0A0MS06 115 aa4.94□□□□□ -1.62
CPSF3-205ENST00000489629 AQP7O14520 342 aa4.94□□□□□ -1.62
CPSF3-205ENST00000489629 B4GALT4O60513 344 aa4.94□□□□□ -1.62
CPSF3-205ENST00000489629 DIAPH1O60610 1272 aaKnown RBP4.94□□□□□ -1.62
CPSF3-205ENST00000489629 GLRBP48167 497 aa4.94□□□□□ -1.62
CPSF3-205ENST00000489629 ICAM4Q14773 271 aa4.94□□□□□ -1.62
CPSF3-205ENST00000489629 FAM209AQ5JX71 171 aa4.94□□□□□ -1.62
CPSF3-205ENST00000489629 NBPF6Q5VWK0 638 aa4.94□□□□□ -1.62
CPSF3-205ENST00000489629 STPG3Q8N7X2 389 aa4.94□□□□□ -1.62
CPSF3-205ENST00000489629 CHST13Q8NET6 341 aa4.94□□□□□ -1.62
CPSF3-205ENST00000489629 PTPRN2Q92932 1015 aa4.94□□□□□ -1.62
CPSF3-205ENST00000489629 DVL3Q92997 716 aaPredicted RBP4.94□□□□□ -1.62
CPSF3-205ENST00000489629 NBPF4Q96M43 638 aa4.94□□□□□ -1.62
CPSF3-205ENST00000489629 ALG1Q9BT22 464 aa4.94□□□□□ -1.62
CPSF3-205ENST00000489629 CD244Q9BZW8 370 aa4.94□□□□□ -1.62
CPSF3-205ENST00000489629 MEGF9Q9H1U4 602 aa4.94□□□□□ -1.62
CPSF3-205ENST00000489629 ARHGAP20Q9P2F6 1191 aa4.94□□□□□ -1.62
CPSF3-205ENST00000489629 PFDN2Q9UHV9 154 aa4.94□□□□□ -1.62
CPSF3-205ENST00000489629 ZDHHC9Q9Y397 364 aa4.94□□□□□ -1.62
CPSF3-205ENST00000489629 NPEPPSL1A6NEC2 478 aa4.93□□□□□ -1.62
CPSF3-205ENST00000489629 FAM90A27PA6NNH2 459 aa4.93□□□□□ -1.62
CPSF3-205ENST00000489629 ARVCFO00192 962 aa4.93□□□□□ -1.62
CPSF3-205ENST00000489629 U2SURPO15042 1029 aaKnown RBP4.93□□□□□ -1.62
CPSF3-205ENST00000489629 AMY2AP04746 511 aa4.93□□□□□ -1.62
CPSF3-205ENST00000489629 FAM153BP0C7A2 387 aa4.93□□□□□ -1.62
CPSF3-205ENST00000489629 AMY2BP19961 511 aa4.93□□□□□ -1.62
CPSF3-205ENST00000489629 CSF2RBP32927 897 aa4.93□□□□□ -1.62
CPSF3-205ENST00000489629 SUMO1P63165 101 aaKnown RBP4.93□□□□□ -1.62
CPSF3-205ENST00000489629 SSRP1Q08945 709 aaKnown RBP4.93□□□□□ -1.62
CPSF3-205ENST00000489629 DBPQ10586 325 aaPredicted RBP4.93□□□□□ -1.62
CPSF3-205ENST00000489629 PAK1Q13153 545 aa4.93□□□□□ -1.62
CPSF3-205ENST00000489629 SERINC3Q13530 473 aa4.93□□□□□ -1.62
CPSF3-205ENST00000489629 GPR19Q15760 415 aa4.93□□□□□ -1.62
CPSF3-205ENST00000489629 MTERF2Q49AM1 385 aa4.93□□□□□ -1.62
CPSF3-205ENST00000489629 SLFN13Q68D06 897 aa4.93□□□□□ -1.62
CPSF3-205ENST00000489629 PCDH19Q8TAB3 1148 aa4.93□□□□□ -1.62
CPSF3-205ENST00000489629 EXOC2Q96KP1 924 aa4.93□□□□□ -1.62
CPSF3-205ENST00000489629 KATNBL1Q9H079 304 aa4.93□□□□□ -1.62
CPSF3-205ENST00000489629 TMPRSS5Q9H3S3 457 aa4.93□□□□□ -1.62
CPSF3-205ENST00000489629 SIRPGQ9P1W8 387 aa4.93□□□□□ -1.62
CPSF3-205ENST00000489629 SRPK3Q9UPE1 567 aa4.93□□□□□ -1.62
CPSF3-205ENST00000489629 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.92□□□□□ -1.62
CPSF3-205ENST00000489629 FBXO21O94952 628 aa4.92□□□□□ -1.62
CPSF3-205ENST00000489629 CNOT4O95628 575 aaKnown RBP4.92□□□□□ -1.62
CPSF3-205ENST00000489629 ATP2B1P20020 1258 aa4.92□□□□□ -1.62
CPSF3-205ENST00000489629 BTBD8Q5XKL5 378 aa4.92□□□□□ -1.62
CPSF3-205ENST00000489629 CIR1Q86X95 450 aaPredicted RBP4.92□□□□□ -1.62
CPSF3-205ENST00000489629 FBXW5Q969U6 566 aa4.92□□□□□ -1.62
CPSF3-205ENST00000489629 WWC2-AS2Q96NR7 200 aa4.92□□□□□ -1.62
CPSF3-205ENST00000489629 CDC6Q99741 560 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms