RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 NKX2-3Q8TAU0 364 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 KLHL14Q9P2G3 628 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 G3BP2Q9UN86 482 aaKnown RBP6.8□□□□□ -1.32
VPS13D-209ENST00000487188 C4AP0C0L4 1744 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 C4BP0C0L5 1744 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 KDM3BQ7LBC6 1761 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 SPDYE3A6NKU9 549 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 DCDC2CA8MYV0 355 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 H0Y3Z8 333 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 PRPF3O43395 683 aaKnown RBP6.8□□□□□ -1.32
VPS13D-209ENST00000487188 MYL1P05976 194 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 GNAT2P19087 354 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 SESN3P58005 492 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 COPS2P61201 443 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 NUGGCQ68CJ6 796 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 GIMAP8Q8ND71 665 aaPredicted RBP6.8□□□□□ -1.32
VPS13D-209ENST00000487188 MOV10L1Q9BXT6 1211 aaKnown RBP6.8□□□□□ -1.32
VPS13D-209ENST00000487188 USP15Q9Y4E8 981 aaPredicted RBP6.8□□□□□ -1.32
VPS13D-209ENST00000487188 RGPD8O14715 1765 aaPredicted RBP6.8□□□□□ -1.32
VPS13D-209ENST00000487188 PXDNQ92626 1479 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 SSU72P8A0A1W2PR75 194 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 F8VZ95 297 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 TTI1O43156 1089 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 PJA2O43164 708 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 MARCH6O60337 910 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 RHOBTB3O94955 611 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 UPP2O95045 317 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 UAP1Q16222 522 aaPredicted RBP6.8□□□□□ -1.32
VPS13D-209ENST00000487188 TMEM154Q6P9G4 183 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 GBP5Q96PP8 586 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 TAOK3Q9H2K8 898 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 SLC5A4Q9NY91 659 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 SLAIN2Q9P270 581 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 SCOCQ9UIL1 159 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 SLC12A4Q9UP95 1085 aa6.8□□□□□ -1.32
VPS13D-209ENST00000487188 A8MUI8 341 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 WNT7AO00755 349 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 PRKAB2O43741 272 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 PLTPP55058 493 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 NCALDP61601 193 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 KLC1Q07866 573 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 ESCO1Q5FWF5 840 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 ARMC3Q5W041 872 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 ARL6IP4Q66PJ3 421 aaKnown RBP6.79□□□□□ -1.32
VPS13D-209ENST00000487188 ADAT2Q7Z6V5 191 aaKnown RBP6.79□□□□□ -1.32
VPS13D-209ENST00000487188 CNKSR1Q969H4 720 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 L3MBTL3Q96JM7 780 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-209ENST00000487188 MTRQ99707 1265 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 DUSP9Q99956 384 aaKnown RBP6.79□□□□□ -1.32
VPS13D-209ENST00000487188 ETNK1Q9HBU6 452 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 RGL1Q9NZL6 768 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 ADAMTS1Q9UHI8 967 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 SALL4Q9UJQ4 1053 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 F8W031 263 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-209ENST00000487188 TRAF5O00463 557 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 FCER1AP12319 257 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 ALDH3A1P30838 453 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 RBM5P52756 815 aaKnown RBP eCLIP6.79□□□□□ -1.32
VPS13D-209ENST00000487188 LRRC14Q15048 493 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 NAB2Q15742 525 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 MEI1Q5TIA1 1274 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 ARHGAP22Q7Z5H3 698 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 TMC3Q7Z5M5 1100 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 INPP4AQ96PE3 977 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-209ENST00000487188 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.79□□□□□ -1.322e-6■■□□□ 13.6
VPS13D-209ENST00000487188 TRIM51Q9BSJ1 452 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 TXLNGQ9NUQ3 528 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 FGFR1OP2Q9NVK5 253 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 AFF2P51816 1311 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 C1orf167Q5SNV9 1468 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 CETN3O15182 167 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 EPHB6O15197 1021 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 CREB3O43889 395 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 SCG2P13521 617 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 PLCG1P19174 1290 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 PMS2P54278 862 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 DYNC1I2Q13409 638 aaKnown RBP6.79□□□□□ -1.32
VPS13D-209ENST00000487188 ZNF268Q14587 947 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-209ENST00000487188 ALX1Q15699 326 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 DYMQ7RTS9 669 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 IFNL2Q8IZJ0 200 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 FAM133AQ8N9E0 248 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 RASGRP4Q8TDF6 673 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 FGD4Q96M96 766 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 DDX23Q9BUQ8 820 aaKnown RBP6.79□□□□□ -1.32
VPS13D-209ENST00000487188 CELF4Q9BZC1 486 aaKnown RBP6.79□□□□□ -1.32
VPS13D-209ENST00000487188 GOLPH3Q9H4A6 298 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 SLITRK6Q9H5Y7 841 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 EPB41L4AQ9HCS5 686 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-209ENST00000487188 DLGAP2Q9P1A6 1054 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 DAAM1Q9Y4D1 1078 aa6.79□□□□□ -1.32
VPS13D-209ENST00000487188 TCP11X1B4DZS4 312 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 KRT16P08779 473 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 STX2P32856 288 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 PHKA1P46020 1223 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 RCAN1P53805 252 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 CASP7P55210 303 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 STK4Q13043 487 aa6.78□□□□□ -1.32
VPS13D-209ENST00000487188 KCTD19Q17RG1 926 aaPredicted RBP6.78□□□□□ -1.32
VPS13D-209ENST00000487188 C6orf118Q5T5N4 469 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms