RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 POMGNT1Q8WZA1 660 aa14.3□□□□□ -0.12
COL6A3-209ENST00000472056 PTPN22Q9Y2R2 807 aa14.3□□□□□ -0.12
COL6A3-209ENST00000472056 CRYMQ14894 314 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 ADRM1Q16186 407 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 ASPRV1Q53RT3 343 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 TRMT44Q8IYL2 757 aaKnown RBP14.29□□□□□ -0.12
COL6A3-209ENST00000472056 SCG3Q8WXD2 468 aaKnown RBP14.29□□□□□ -0.12
COL6A3-209ENST00000472056 CDHR1Q96JP9 859 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.29□□□□□ -0.12
COL6A3-209ENST00000472056 ZBED4O75132 1171 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 PLTPP55058 493 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 TTC39CQ8N584 583 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 TNRQ92752 1358 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 RXRAP19793 462 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 SUCLA2Q9P2R7 463 aaPredicted RBP14.29□□□□□ -0.12
COL6A3-209ENST00000472056 RTCBQ9Y3I0 505 aaKnown RBP14.29□□□□□ -0.12
COL6A3-209ENST00000472056 L3MBTL1Q9Y468 752 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 H7C0C1 242 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 ATP5OP48047 213 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 PTGDRQ13258 359 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 H3BRJ5 948 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 ARL4CP56559 192 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 OCRLQ01968 901 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 IDI1Q13907 227 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 DHX34Q14147 1143 aaKnown RBP14.29□□□□□ -0.12
COL6A3-209ENST00000472056 TRIM59Q8IWR1 403 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 FANCBQ8NB91 859 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 MAGEB5Q9BZ81 275 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 OSBPL5Q9H0X9 879 aaPredicted RBP14.29□□□□□ -0.12
COL6A3-209ENST00000472056 PSTPIP2Q9H939 334 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 RCOR1Q9UKL0 485 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 TRPC1P48995 793 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 USP28Q96RU2 1077 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 PKD2L2Q9NZM6 624 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 NR2F2P24468 414 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 RCAN1P53805 252 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 DNAL1Q4LDG9 190 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 STRIP2Q9ULQ0 834 aa14.29□□□□□ -0.12
COL6A3-209ENST00000472056 HIBADHP31937 336 aaKnown RBP14.28□□□□□ -0.12
COL6A3-209ENST00000472056 PPP2R5CQ13362 524 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 TNFAIP1Q13829 316 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 BSPRYQ5W0U4 402 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 SYMPKQ92797 1274 aaKnown RBP14.28□□□□□ -0.12
COL6A3-209ENST00000472056 K7ENM7 598 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 PIK3R2O00459 728 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 TCP11X2Q5H9J9 407 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 CMTM5Q96DZ9 223 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 CHMP6Q96FZ7 201 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 EPN3Q9H201 632 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 GEMIN8Q9NWZ8 242 aaKnown RBP14.28□□□□□ -0.12
COL6A3-209ENST00000472056 SMG5Q9UPR3 1016 aaKnown RBP14.28□□□□□ -0.12
COL6A3-209ENST00000472056 SSH3Q8TE77 659 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 WDR19Q8NEZ3 1342 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 DAB1O75553 588 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 CEP55Q53EZ4 464 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 NVLO15381 856 aaKnown RBP14.28□□□□□ -0.12
COL6A3-209ENST00000472056 E2F4Q16254 413 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 HORMAD1Q86X24 394 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 KIAA2013Q8IYS2 634 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 AGGF1Q8N302 714 aaeCLIP14.28□□□□□ -0.12
COL6A3-209ENST00000472056 TNIP2Q8NFZ5 429 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 DEPDC1BQ8WUY9 529 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 OPTNQ96CV9 577 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 PPP1R2P1Q96PQ5 205 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 PCDHA13Q9Y5I0 950 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 SRGAP2CP0DJJ0 459 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 PPM1KQ8N3J5 372 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 EML4Q9HC35 981 aaKnown RBP14.28□□□□□ -0.12
COL6A3-209ENST00000472056 TMED10P49755 219 aaKnown RBP14.28□□□□□ -0.12
COL6A3-209ENST00000472056 ARL13BQ3SXY8 428 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 LONRF3Q496Y0 759 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 TTBK2Q6IQ55 1244 aa14.28□□□□□ -0.12
COL6A3-209ENST00000472056 IL10P22301 178 aa14.27□□□□□ -0.12
COL6A3-209ENST00000472056 TRPV6Q9H1D0 765 aa14.27□□□□□ -0.12
COL6A3-209ENST00000472056 TAF1DQ9H5J8 278 aaPredicted RBP14.27□□□□□ -0.12
COL6A3-209ENST00000472056 ST7Q9NRC1 585 aa14.27□□□□□ -0.12
COL6A3-209ENST00000472056 GID8Q9NWU2 228 aa14.27□□□□□ -0.12
COL6A3-209ENST00000472056 VPS54Q9P1Q0 977 aa14.27□□□□□ -0.12
COL6A3-209ENST00000472056 PLEKHG1Q9ULL1 1385 aa14.27□□□□□ -0.12
COL6A3-209ENST00000472056 TMEM191BP0C7N4 346 aa14.27□□□□□ -0.12
COL6A3-209ENST00000472056 ITGA6P23229 1130 aa14.27□□□□□ -0.12
COL6A3-209ENST00000472056 ARL4AP40617 200 aa14.27□□□□□ -0.12
COL6A3-209ENST00000472056 PATL1Q86TB9 770 aaKnown RBP14.27□□□□□ -0.12
COL6A3-209ENST00000472056 GPCPD1Q9NPB8 672 aa14.27□□□□□ -0.12
COL6A3-209ENST00000472056 SH3GLB2Q9NR46 395 aa14.27□□□□□ -0.12
COL6A3-209ENST00000472056 WARS2Q9UGM6 360 aaKnown RBP14.27□□□□□ -0.12
COL6A3-209ENST00000472056 RFX7Q2KHR2 1363 aa14.27□□□□□ -0.12
COL6A3-209ENST00000472056 WDR17Q8IZU2 1322 aa14.27□□□□□ -0.12
COL6A3-209ENST00000472056 RASA4BC9J798 803 aa14.27□□□□□ -0.12
COL6A3-209ENST00000472056 RASA4O43374 803 aa14.27□□□□□ -0.12
COL6A3-209ENST00000472056 ZRANB2O95218 330 aaKnown RBP eCLIP14.27□□□□□ -0.12
COL6A3-209ENST00000472056 CHRNA3P32297 505 aa14.27□□□□□ -0.12
COL6A3-209ENST00000472056 TFDP1Q14186 410 aa14.27□□□□□ -0.12
COL6A3-209ENST00000472056 NAF1Q96HR8 494 aaKnown RBP14.27□□□□□ -0.12
COL6A3-209ENST00000472056 PDP2Q9P2J9 529 aa14.27□□□□□ -0.12
COL6A3-209ENST00000472056 GTPBP10A4D1E9 387 aaKnown RBP14.27□□□□□ -0.13
COL6A3-209ENST00000472056 CYP2J2P51589 502 aa14.27□□□□□ -0.13
COL6A3-209ENST00000472056 CLEC17AQ6ZS10 378 aa14.27□□□□□ -0.13
COL6A3-209ENST00000472056 ATP6V1G3Q96LB4 118 aa14.27□□□□□ -0.13
COL6A3-209ENST00000472056 KIF17Q9P2E2 1029 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms