RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 NCKAP1LP55160 1127 aa5.9□□□□□ -1.46
VPS13A-210ENST00000471439 SERINC3Q13530 473 aa5.9□□□□□ -1.46
VPS13A-210ENST00000471439 LAPTM5Q13571 262 aa5.9□□□□□ -1.46
VPS13A-210ENST00000471439 RAB3GAP1Q15042 981 aa5.9□□□□□ -1.46
VPS13A-210ENST00000471439 LCE1DQ5T752 114 aa5.9□□□□□ -1.46
VPS13A-210ENST00000471439 TMEM132EQ6IEE7 984 aa5.9□□□□□ -1.46
VPS13A-210ENST00000471439 RPTNQ6XPR3 784 aa5.9□□□□□ -1.46
VPS13A-210ENST00000471439 DPH6Q7L8W6 267 aa5.9□□□□□ -1.46
VPS13A-210ENST00000471439 TMC6Q7Z403 805 aa5.9□□□□□ -1.46
VPS13A-210ENST00000471439 JAMLQ86YT9 394 aa5.9□□□□□ -1.46
VPS13A-210ENST00000471439 DIS3Q9Y2L1 958 aaKnown RBP5.9□□□□□ -1.46
VPS13A-210ENST00000471439 PLEKHG2Q9H7P9 1386 aa5.9□□□□□ -1.47
VPS13A-210ENST00000471439 CCDC144AA2RUR9 1427 aa5.9□□□□□ -1.47
VPS13A-210ENST00000471439 ATP7BP35670 1465 aa5.9□□□□□ -1.47
VPS13A-210ENST00000471439 CCDC141Q6ZP82 1450 aa5.9□□□□□ -1.47
VPS13A-210ENST00000471439 A0A087WZG4 1122 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 ANKRD34BA5PLL1 514 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 SEMA7AO75326 666 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 PPM1BO75688 479 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 KCNH1O95259 989 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 YBX1P67809 324 aaKnown RBP5.89□□□□□ -1.47
VPS13A-210ENST00000471439 AMPD2Q01433 879 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 CYP4F3Q08477 520 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 PLEKHN1Q494U1 663 aaPredicted RBP5.89□□□□□ -1.47
VPS13A-210ENST00000471439 MBLAC2Q68D91 279 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 RCSD1Q6JBY9 416 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 CYP2R1Q6VVX0 501 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 CPNE8Q86YQ8 564 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 CKAP2LQ8IYA6 745 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 PANK1Q8TE04 598 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 PPP1R14AQ96A00 147 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 FAM122AQ96E09 287 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 TOX2Q96NM4 488 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 HIRIP3Q9BW71 556 aaPredicted RBP5.89□□□□□ -1.47
VPS13A-210ENST00000471439 IRF2BPLQ9H1B7 796 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 PIF1Q9H611 641 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 ST7Q9NRC1 585 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 ACTR10Q9NZ32 417 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 AKT3Q9Y243 479 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 BACE2Q9Y5Z0 518 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 CCNB3Q8WWL7 1395 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 HFM1A2PYH4 1435 aa5.89□□□□□ -1.47
VPS13A-210ENST00000471439 LOC105371045A0A1W2PR82 267 aa5.88□□□□□ -1.47
VPS13A-210ENST00000471439 NUAK1O60285 661 aa5.88□□□□□ -1.47
VPS13A-210ENST00000471439 PPP1R11O60927 126 aaPredicted RBP5.88□□□□□ -1.47
VPS13A-210ENST00000471439 DBHP09172 617 aa5.88□□□□□ -1.47
VPS13A-210ENST00000471439 ZSCAN22P10073 491 aaPredicted RBP5.88□□□□□ -1.47
VPS13A-210ENST00000471439 PI3P19957 117 aa5.88□□□□□ -1.47
VPS13A-210ENST00000471439 NOP2P46087 812 aaKnown RBP5.88□□□□□ -1.47
VPS13A-210ENST00000471439 RAB33AQ14088 237 aa5.88□□□□□ -1.47
VPS13A-210ENST00000471439 CCDC144BQ3MJ40 725 aa5.88□□□□□ -1.47
VPS13A-210ENST00000471439 HLA-DQA1Q5Y7H0 255 aa5.88□□□□□ -1.47
VPS13A-210ENST00000471439 GPRC5CQ9NQ84 441 aa5.88□□□□□ -1.47
VPS13A-210ENST00000471439 EMC9Q9Y3B6 208 aa5.88□□□□□ -1.47
VPS13A-210ENST00000471439 RWDD3Q9Y3V2 267 aa5.88□□□□□ -1.47
VPS13A-210ENST00000471439 A0A1W2PQ27 194 aa5.87□□□□□ -1.47
VPS13A-210ENST00000471439 A0A1W2PQ64 194 aa5.87□□□□□ -1.47
VPS13A-210ENST00000471439 A0A1W2PQC6 194 aa5.87□□□□□ -1.47
VPS13A-210ENST00000471439 A0A1W2PQD8 194 aa5.87□□□□□ -1.47
VPS13A-210ENST00000471439 C2orf71A6NGG8 1288 aa5.87□□□□□ -1.47
VPS13A-210ENST00000471439 MPOP05164 745 aa5.87□□□□□ -1.47
VPS13A-210ENST00000471439 L1CAMP32004 1257 aa5.87□□□□□ -1.47
VPS13A-210ENST00000471439 ARL4AP40617 200 aa5.87□□□□□ -1.47
VPS13A-210ENST00000471439 ZNF200P98182 395 aaPredicted RBP5.87□□□□□ -1.47
VPS13A-210ENST00000471439 SCRN1Q12765 414 aa5.87□□□□□ -1.47
VPS13A-210ENST00000471439 GRB10Q13322 594 aa5.87□□□□□ -1.47
VPS13A-210ENST00000471439 TNNI3KQ59H18 835 aa5.87□□□□□ -1.47
VPS13A-210ENST00000471439 BICRALQ6AI39 1079 aa5.87□□□□□ -1.47
VPS13A-210ENST00000471439 FAM178BQ8IXR5 827 aa5.87□□□□□ -1.47
VPS13A-210ENST00000471439 BTN2A2Q8WVV5 523 aa5.87□□□□□ -1.47
VPS13A-210ENST00000471439 RCC1LQ96I51 464 aaKnown RBP5.87□□□□□ -1.47
VPS13A-210ENST00000471439 BCAS3Q9H6U6 928 aa5.87□□□□□ -1.47
VPS13A-210ENST00000471439 EPB41L4AQ9HCS5 686 aaPredicted RBP5.87□□□□□ -1.47
VPS13A-210ENST00000471439 CLEC1BQ9P126 229 aa5.87□□□□□ -1.47
VPS13A-210ENST00000471439 GULP1Q9UBP9 304 aa5.87□□□□□ -1.47
VPS13A-210ENST00000471439 CCDC18Q5T9S5 1454 aa5.87□□□□□ -1.47
VPS13A-210ENST00000471439 UNC79Q9P2D8 2635 aa5.87□□□□□ -1.47
VPS13A-210ENST00000471439 LTBP1Q14766 1721 aa5.86□□□□□ -1.47
VPS13A-210ENST00000471439 KIF1AQ12756 1690 aa5.86□□□□□ -1.47
VPS13A-210ENST00000471439 ARHGEF10O15013 1369 aa5.86□□□□□ -1.47
VPS13A-210ENST00000471439 VEGFAP15692 232 aaPredicted RBP5.86□□□□□ -1.47
VPS13A-210ENST00000471439 SEPHS1P49903 392 aa5.86□□□□□ -1.47
VPS13A-210ENST00000471439 BMS1Q14692 1282 aaKnown RBP5.86□□□□□ -1.47
VPS13A-210ENST00000471439 SF1Q15637 639 aaKnown RBP5.86□□□□□ -1.47
VPS13A-210ENST00000471439 DDR2Q16832 855 aa5.86□□□□□ -1.47
VPS13A-210ENST00000471439 KRTAP19-4Q3LI73 84 aa5.86□□□□□ -1.47
VPS13A-210ENST00000471439 EEF1DP3Q658K8 133 aa5.86□□□□□ -1.47
VPS13A-210ENST00000471439 GTF2IRD2BQ6EKJ0 949 aa5.86□□□□□ -1.47
VPS13A-210ENST00000471439 GTF2IRD2Q86UP8 949 aa5.86□□□□□ -1.47
VPS13A-210ENST00000471439 IGDCC3Q8IVU1 814 aa5.86□□□□□ -1.47
VPS13A-210ENST00000471439 TCP11L2Q8N4U5 519 aa5.86□□□□□ -1.47
VPS13A-210ENST00000471439 BVESQ8NE79 360 aa5.86□□□□□ -1.47
VPS13A-210ENST00000471439 MRGPRX3Q96LB0 322 aa5.86□□□□□ -1.47
VPS13A-210ENST00000471439 TRIM55Q9BYV6 548 aa5.86□□□□□ -1.47
VPS13A-210ENST00000471439 OSBPL2Q9H1P3 480 aa5.86□□□□□ -1.47
VPS13A-210ENST00000471439 PRDM11Q9NQV5 511 aa5.86□□□□□ -1.47
VPS13A-210ENST00000471439 PDLIM7Q9NR12 457 aa5.86□□□□□ -1.47
VPS13A-210ENST00000471439 SIRT5Q9NXA8 310 aa5.86□□□□□ -1.47
VPS13A-210ENST00000471439 CNOT6Q9ULM6 557 aaKnown RBP5.86□□□□□ -1.47
VPS13A-210ENST00000471439 KCTD3Q9Y597 815 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms