RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 KCNB1Q14721 858 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 SEC23AQ15436 765 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 FIGNQ5HY92 759 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 EMC10Q5UCC4 262 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 EMBQ6PCB8 327 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 CAGE1Q8TC20 777 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 RAET1EQ8TD07 263 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 BCAS4Q8TDM0 211 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 CAVIN3Q969G5 261 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 MTRQ99707 1265 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 PAGR1Q9BTK6 254 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 TTYH3Q9C0H2 523 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 RBM28Q9NW13 759 aaKnown RBP10.61□□□□□ -0.71
HDAC3-205ENST00000469550 ZNHIT6Q9NWK9 470 aaKnown RBP10.61□□□□□ -0.71
HDAC3-205ENST00000469550 FAM205CA6NFA0 338 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 PDE2AO00408 941 aaPredicted RBP10.61□□□□□ -0.71
HDAC3-205ENST00000469550 ZEB2O60315 1214 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 CYP2C8P10632 490 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 HNRNPH1P31943 449 aaKnown RBP10.61□□□□□ -0.71
HDAC3-205ENST00000469550 GJA8P48165 433 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 ZBED6P86452 979 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 PTGDRQ13258 359 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 NNTQ13423 1086 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 IRF5Q13568 498 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 MTFR1Q15390 333 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 EARS2Q5JPH6 523 aaKnown RBP10.61□□□□□ -0.71
HDAC3-205ENST00000469550 ARL6IP4Q66PJ3 421 aaKnown RBP10.61□□□□□ -0.71
HDAC3-205ENST00000469550 CREG2Q8IUH2 290 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 ZSCAN29Q8IWY8 852 aaPredicted RBP10.61□□□□□ -0.71
HDAC3-205ENST00000469550 CNPY4Q8N129 248 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 CCDC82Q8N4S0 544 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 SPATA5Q8NB90 893 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 PROCA1Q8NCQ7 364 aaPredicted RBP10.61□□□□□ -0.71
HDAC3-205ENST00000469550 KAT2BQ92831 832 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 NSUN4Q96CB9 384 aaKnown RBP10.61□□□□□ -0.71
HDAC3-205ENST00000469550 UBAC1Q9BSL1 405 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 A1CFQ9NQ94 594 aaKnown RBP10.61□□□□□ -0.71
HDAC3-205ENST00000469550 ANAPC4Q9UJX5 808 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 SNX12Q9UMY4 172 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 AGTPBP1Q9UPW5 1226 aa10.61□□□□□ -0.71
HDAC3-205ENST00000469550 A0A1W2PQJ5 194 aa10.6□□□□□ -0.71
HDAC3-205ENST00000469550 IDEP14735 1019 aa10.6□□□□□ -0.71
HDAC3-205ENST00000469550 LONP1P36776 959 aaKnown RBP10.6□□□□□ -0.71
HDAC3-205ENST00000469550 PRCPP42785 496 aa10.6□□□□□ -0.71
HDAC3-205ENST00000469550 VAV2P52735 878 aa10.6□□□□□ -0.71
HDAC3-205ENST00000469550 EPHB4P54760 987 aa10.6□□□□□ -0.71
HDAC3-205ENST00000469550 GNGT1P63211 74 aa10.6□□□□□ -0.71
HDAC3-205ENST00000469550 UBXN2AP68543 259 aa10.6□□□□□ -0.71
HDAC3-205ENST00000469550 APBA1Q02410 837 aa10.6□□□□□ -0.71
HDAC3-205ENST00000469550 PRKCZQ05513 592 aa10.6□□□□□ -0.71
HDAC3-205ENST00000469550 KIF5AQ12840 1032 aa10.6□□□□□ -0.71
HDAC3-205ENST00000469550 ZNF174Q15697 407 aa10.6□□□□□ -0.71
HDAC3-205ENST00000469550 TRIM58Q8NG06 486 aa10.6□□□□□ -0.71
HDAC3-205ENST00000469550 PXYLP1Q8TE99 480 aa10.6□□□□□ -0.71
HDAC3-205ENST00000469550 NUP133Q8WUM0 1156 aa10.6□□□□□ -0.71
HDAC3-205ENST00000469550 CAPZA3Q96KX2 299 aa10.6□□□□□ -0.71
HDAC3-205ENST00000469550 TACO1Q9BSH4 297 aaKnown RBP10.6□□□□□ -0.71
HDAC3-205ENST00000469550 BLZF1Q9H2G9 400 aa10.6□□□□□ -0.71
HDAC3-205ENST00000469550 RNF216Q9NWF9 866 aaPredicted RBP10.6□□□□□ -0.71
HDAC3-205ENST00000469550 VPS54Q9P1Q0 977 aa10.6□□□□□ -0.71
HDAC3-205ENST00000469550 SRRM3A6NNA2 597 aaPredicted RBP10.59□□□□□ -0.71
HDAC3-205ENST00000469550 CALM1P0DP23 149 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 CALM2P0DP24 149 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 CALM3P0DP25 149 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 CCL5P13501 91 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 TDO2P48775 406 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 LIG3P49916 1009 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 PICALMQ13492 652 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 NPY5RQ15761 445 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 GLE1Q53GS7 698 aaKnown RBP10.59□□□□□ -0.71
HDAC3-205ENST00000469550 RRP12Q5JTH9 1297 aaKnown RBP10.59□□□□□ -0.71
HDAC3-205ENST00000469550 GADL1Q6ZQY3 521 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 SND1Q7KZF4 910 aaKnown RBP eCLIP10.59□□□□□ -0.71
HDAC3-205ENST00000469550 YTHDF3Q7Z739 585 aaKnown RBP10.59□□□□□ -0.71
HDAC3-205ENST00000469550 CMTR1Q8N1G2 835 aaKnown RBP10.59□□□□□ -0.71
HDAC3-205ENST00000469550 MAGEB6Q8N7X4 407 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 PRPF38AQ8NAV1 312 aaKnown RBP10.59□□□□□ -0.71
HDAC3-205ENST00000469550 C1orf131Q8NDD1 294 aaKnown RBP10.59□□□□□ -0.71
HDAC3-205ENST00000469550 ESR2Q92731 530 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 SECISBP2LQ93073 1101 aaKnown RBP10.59□□□□□ -0.71
HDAC3-205ENST00000469550 ZBTB9Q96C00 473 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 ZKSCAN3Q9BRR0 538 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 LACRTQ9GZZ8 138 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 ARMT1Q9H993 441 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 NHEJ1Q9H9Q4 299 aaPredicted RBP10.59□□□□□ -0.71
HDAC3-205ENST00000469550 MAGEC2Q9UBF1 373 aaPredicted RBP10.59□□□□□ -0.71
HDAC3-205ENST00000469550 ZMYND10O75800 440 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 FSBPO95073 299 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 TCP1P17987 556 aaKnown RBP10.59□□□□□ -0.71
HDAC3-205ENST00000469550 HNRNPH3P31942 346 aaKnown RBP10.59□□□□□ -0.71
HDAC3-205ENST00000469550 CCDC155Q8N6L0 562 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 STAMQ92783 540 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 DHTKD1Q96HY7 919 aaPredicted RBP10.59□□□□□ -0.71
HDAC3-205ENST00000469550 JADE2Q9NQC1 790 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 EXOC1Q9NV70 894 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 GGA2Q9UJY4 613 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 PNMA3Q9UL41 463 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 GABRQQ9UN88 632 aa10.59□□□□□ -0.71
HDAC3-205ENST00000469550 MYH6P13533 1939 aa10.58□□□□□ -0.72
HDAC3-205ENST00000469550 RCCD1A6NED2 376 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms