RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 EMILIN3Q9NT22 766 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 TRMT1Q9NXH9 659 aaKnown RBP8.45□□□□□ -1.06
COL6A3-208ENST00000468792 GPRC5DQ9NZD1 345 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 FAM184BQ9ULE4 1060 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 CCPG1Q9ULG6 757 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 TRAF3IP3Q9Y228 551 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 LUC7L2Q9Y383 392 aaKnown RBP8.45□□□□□ -1.06
COL6A3-208ENST00000468792 COL4A3BPQ9Y5P4 624 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 ADGRG1Q9Y653 693 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 UBE4BO95155 1302 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 DOCK1Q14185 1865 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 LOXHD1Q8IVV2 1947 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 SHTN1A0MZ66 631 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 PDXKO00764 312 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 EIF3DO15371 548 aaKnown RBP eCLIP8.44□□□□□ -1.06
COL6A3-208ENST00000468792 MAPTP10636 758 aaKnown RBP8.44□□□□□ -1.06
COL6A3-208ENST00000468792 IDEP14735 1019 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 PTPRAP18433 802 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 VCAM1P19320 739 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 KRT9P35527 623 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 MTIF2P46199 727 aaKnown RBP8.44□□□□□ -1.06
COL6A3-208ENST00000468792 ZNF131P52739 623 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 R3HDM1Q15032 1099 aaKnown RBP8.44□□□□□ -1.06
COL6A3-208ENST00000468792 TSR1Q2NL82 804 aaKnown RBP8.44□□□□□ -1.06
COL6A3-208ENST00000468792 HERC4Q5GLZ8 1057 aaPredicted RBP8.44□□□□□ -1.06
COL6A3-208ENST00000468792 SH3D19Q5HYK7 790 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 NCAPH2Q6IBW4 605 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 CCDC174Q6PII3 467 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 SAMD7Q7Z3H4 446 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 ZNF397Q8NF99 534 aaPredicted RBP8.44□□□□□ -1.06
COL6A3-208ENST00000468792 RDM1Q8NG50 284 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 CYP2W1Q8TAV3 490 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 RBM46Q8TBY0 533 aaKnown RBP8.44□□□□□ -1.06
COL6A3-208ENST00000468792 SCFD1Q8WVM8 642 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 TBC1D5Q92609 795 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 KLRG1Q96E93 195 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 NOC4LQ9BVI4 516 aaKnown RBP8.44□□□□□ -1.06
COL6A3-208ENST00000468792 TIPINQ9BVW5 301 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 TEKT3Q9BXF9 490 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 NUCKS1Q9H1E3 243 aaKnown RBP8.44□□□□□ -1.06
COL6A3-208ENST00000468792 NDST4Q9H3R1 872 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 JADE2Q9NQC1 790 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 TBC1D22BQ9NU19 505 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 FBXO28Q9NVF7 368 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 ODF2LQ9ULJ1 636 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 UBIAD1Q9Y5Z9 338 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 SMCHD1A6NHR9 2005 aa8.44□□□□□ -1.06
COL6A3-208ENST00000468792 TTC26A0AVF1 554 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 POTEFA5A3E0 1075 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 IPO5O00410 1097 aaKnown RBP8.43□□□□□ -1.06
COL6A3-208ENST00000468792 EML1O00423 815 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 VWA5AO00534 786 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 GAS7O60861 476 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 STAM2O75886 525 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 POTEIP0CG38 1075 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 GUCY2CP25092 1073 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 STAT3P40763 770 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 TUBB4BP68371 445 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 MYBPC2Q14324 1141 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 KNOP1Q1ED39 458 aaKnown RBP8.43□□□□□ -1.06
COL6A3-208ENST00000468792 TBC1D10BQ4KMP7 808 aaPredicted RBP8.43□□□□□ -1.06
COL6A3-208ENST00000468792 NBPF12Q5TAG4 269 aaPredicted RBP8.43□□□□□ -1.06
COL6A3-208ENST00000468792 RINT1Q6NUQ1 792 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 POTEGQ6S5H5 508 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 POTEEQ6S8J3 1075 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 RAD9BQ6WBX8 426 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 TOGARAM2Q6ZUX3 1019 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 C1orf186Q6ZWK4 172 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 FRMD5Q7Z6J6 570 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 TRIM59Q8IWR1 403 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 REPS2Q8NFH8 660 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 SYTL5Q8TDW5 730 aaPredicted RBP8.43□□□□□ -1.06
COL6A3-208ENST00000468792 ANKRD7Q92527 254 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 SYN2Q92777 582 aaPredicted RBP8.43□□□□□ -1.06
COL6A3-208ENST00000468792 GJA10Q969M2 543 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 ERO1AQ96HE7 468 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 AGBL1Q96MI9 1066 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 ZNF577Q9BSK1 485 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 PICK1Q9NRD5 415 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 ZNHIT6Q9NWK9 470 aaKnown RBP8.43□□□□□ -1.06
COL6A3-208ENST00000468792 DBR1Q9UK59 544 aaKnown RBP8.43□□□□□ -1.06
COL6A3-208ENST00000468792 PLAGL2Q9UPG8 496 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 SIK3Q9Y2K2 1263 aa8.43□□□□□ -1.06
COL6A3-208ENST00000468792 EPN1Q9Y6I3 576 aaPredicted RBP8.43□□□□□ -1.06
COL6A3-208ENST00000468792 RASSF10A6NK89 507 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 B4DLN1 442 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 CETN3O15182 167 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 SLC16A3O15427 465 aaKnown RBP8.42□□□□□ -1.06
COL6A3-208ENST00000468792 DHX15O43143 795 aaKnown RBP8.42□□□□□ -1.06
COL6A3-208ENST00000468792 CALUO43852 315 aaPredicted RBP8.42□□□□□ -1.06
COL6A3-208ENST00000468792 FLOT1O75955 427 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 SLU7O95391 586 aaKnown RBP8.42□□□□□ -1.06
COL6A3-208ENST00000468792 KRT18P05783 430 aaKnown RBP8.42□□□□□ -1.06
COL6A3-208ENST00000468792 P4HBP07237 508 aaKnown RBP8.42□□□□□ -1.06
COL6A3-208ENST00000468792 PYGBP11216 843 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 ITGB5P18084 799 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 TRIM21P19474 475 aaKnown RBP8.42□□□□□ -1.06
COL6A3-208ENST00000468792 RPL13P26373 211 aaKnown RBP8.42□□□□□ -1.06
COL6A3-208ENST00000468792 MCCD1P59942 119 aaPredicted RBP8.42□□□□□ -1.06
COL6A3-208ENST00000468792 SNRPFP62306 86 aaKnown RBP8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms