RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 CCDC26Q8TAB7 109 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 METTL14Q9HCE5 456 aaKnown RBP12.75□□□□□ -0.37
NPHP4-204ENST00000460696 FAM237AA0A1B0GTK4 181 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 K7ENM7 598 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 VSNL1P62760 191 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 BIRC3Q13489 604 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 PODNQ7Z5L7 613 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 SFR1Q86XK3 245 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 VTI1AQ96AJ9 217 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 RTFDC1Q9BY42 306 aaPredicted RBP12.75□□□□□ -0.37
NPHP4-204ENST00000460696 CCPG1Q9ULG6 757 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 LRRN2O75325 713 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 AFPP02771 609 aaKnown RBP12.74□□□□□ -0.37
NPHP4-204ENST00000460696 LMNB1P20700 586 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 PMS1P54277 932 aaKnown RBP12.74□□□□□ -0.37
NPHP4-204ENST00000460696 CDKAL1Q5VV42 579 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 KCTD16Q68DU8 428 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 TRIM65Q6PJ69 517 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 ZNF577Q9BSK1 485 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 LARSQ9P2J5 1176 aaKnown RBP12.74□□□□□ -0.37
NPHP4-204ENST00000460696 STK24Q9Y6E0 443 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 RGPD5Q99666 1765 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 ZNF185O15231 689 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 NCK2O43639 380 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 SLC37A4O43826 429 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 ATP1A2P50993 1020 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 SMTNP53814 917 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 FAM83BQ5T0W9 1011 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 NT5DC1Q5TFE4 455 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 TTC19Q6DKK2 380 aaPredicted RBP12.74□□□□□ -0.37
NPHP4-204ENST00000460696 CDC42EP5Q6NZY7 148 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 FAM186BQ8IYM0 893 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 PCIF1Q9H4Z3 704 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 JMJD4Q9H9V9 463 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 FAM184BQ9ULE4 1060 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 SLIT2O94813 1529 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 ITIH6Q6UXX5 1313 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 ONECUT3O60422 494 aaPredicted RBP12.74□□□□□ -0.37
NPHP4-204ENST00000460696 GFPT2O94808 682 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 NFIAQ12857 509 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 LLGL1Q15334 1064 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 SCLT1Q96NL6 688 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 C7orf25Q9BPX7 421 aa12.74□□□□□ -0.37
NPHP4-204ENST00000460696 STRCQ7RTU9 1775 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 KRIT1O00522 736 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 NDUFAB1O14561 156 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 TFRCP02786 760 aaKnown RBP12.73□□□□□ -0.37
NPHP4-204ENST00000460696 ZSCAN20P17040 1043 aaPredicted RBP12.73□□□□□ -0.37
NPHP4-204ENST00000460696 MCTP2Q6DN12 878 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 PLVAPQ9BX97 442 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 EPB41L5Q9HCM4 733 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 ADAM21Q9UKJ8 722 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 ZNRF3Q9ULT6 936 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 ATP6V0A2Q9Y487 856 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 SRCAPQ6ZRS2 3230 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 KCNH2Q12809 1159 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 SF3A3Q12874 501 aaKnown RBP eCLIP12.73□□□□□ -0.37
NPHP4-204ENST00000460696 SEPT7Q16181 437 aaKnown RBP12.73□□□□□ -0.37
NPHP4-204ENST00000460696 NFRKBQ6P4R8 1299 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 GADL1Q6ZQY3 521 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 NOA1Q8NC60 698 aaKnown RBP12.73□□□□□ -0.37
NPHP4-204ENST00000460696 SUGCTQ9HAC7 445 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 GCNT4Q9P109 453 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 RNF40O75150 1001 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 CCDC50Q8IVM0 306 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 CCDC155Q8N6L0 562 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 FAM71BQ8TC56 605 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 TEKT3Q9BXF9 490 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 DPH5Q9H2P9 285 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 RASAL2Q9UJF2 1139 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 AMFRQ9UKV5 643 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 PDS5AQ29RF7 1337 aaKnown RBP12.73□□□□□ -0.37
NPHP4-204ENST00000460696 ATRNO75882 1429 aa12.73□□□□□ -0.37
NPHP4-204ENST00000460696 EIF3CLB5ME19 914 aaKnown RBP12.72□□□□□ -0.37
NPHP4-204ENST00000460696 HEXIM1O94992 359 aaKnown RBP12.72□□□□□ -0.37
NPHP4-204ENST00000460696 SERPING1P05155 500 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 BCRP11274 1271 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 CTNNA2P26232 953 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 PPFIA1Q13136 1202 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 TNFAIP1Q13829 316 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 FAM102BQ5T8I3 360 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 MICALL1Q8N3F8 863 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 PPM1KQ8N3J5 372 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 CRAMP1Q96RY5 1269 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 MMS19Q96T76 1030 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 EIF3CQ99613 913 aaKnown RBP12.72□□□□□ -0.37
NPHP4-204ENST00000460696 KBTBD4Q9NVX7 518 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 RGL1Q9NZL6 768 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 PSMD14O00487 310 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 PDIA5Q14554 519 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 XKR9Q5GH70 373 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 FNBP1Q96RU3 617 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 SELENOSQ9BQE4 189 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 MED4Q9NPJ6 270 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 A0A0U1RQJ8 604 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 GOLGA6L7A0A1B0GV03 622 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 PLEKP08567 350 aaPredicted RBP12.72□□□□□ -0.37
NPHP4-204ENST00000460696 FUT2Q10981 343 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 ALKBH5Q6P6C2 394 aaKnown RBP12.72□□□□□ -0.37
NPHP4-204ENST00000460696 PACSIN2Q9UNF0 486 aaPredicted RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms