RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 TMEM59LQ9UK28 342 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 NFU1Q9UMS0 254 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 SAMM50Q9Y512 469 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 COL16A1Q07092 1604 aaPredicted RBP9.35□□□□□ -0.91
VPS50-208ENST00000458707 ESYT2A0FGR8 921 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 HMGB1P1B2RPK0 211 aaPredicted RBP9.35□□□□□ -0.91
VPS50-208ENST00000458707 BHMG1C9JSJ3 638 aaPredicted RBP9.35□□□□□ -0.91
VPS50-208ENST00000458707 PPP1R37O75864 691 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 NOL4O94818 638 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 SERPING1P05155 500 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 USP17L8P0C7I0 530 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 NR1D1P20393 614 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 GNA11P29992 359 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 HSPA9P38646 679 aaKnown RBP9.35□□□□□ -0.91
VPS50-208ENST00000458707 TECP42680 631 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 DDR1Q08345 913 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 CDC37Q16543 378 aaPredicted RBP9.35□□□□□ -0.91
VPS50-208ENST00000458707 PTGISQ16647 500 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 SLC9C1Q4G0N8 1177 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 ZCWPW2Q504Y3 356 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 ARSIQ5FYB1 569 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 FBXW10Q5XX13 1052 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 TTC19Q6DKK2 380 aaPredicted RBP9.35□□□□□ -0.91
VPS50-208ENST00000458707 MICALCLQ6ZW33 695 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 SH2D3CQ8N5H7 860 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 CASKIN2Q8WXE0 1202 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 LARP4BQ92615 738 aaKnown RBP9.35□□□□□ -0.91
VPS50-208ENST00000458707 CALR3Q96L12 384 aaKnown RBP9.35□□□□□ -0.91
VPS50-208ENST00000458707 PNMA5Q96PV4 448 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 MTMR9Q96QG7 549 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 PSMB7Q99436 277 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 PAIP2Q9BPZ3 127 aaKnown RBP9.35□□□□□ -0.91
VPS50-208ENST00000458707 EPB41L5Q9HCM4 733 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 C6orf50Q9HD87 102 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 LUC7LQ9NQ29 371 aaKnown RBP9.35□□□□□ -0.91
VPS50-208ENST00000458707 A1CFQ9NQ94 594 aaKnown RBP9.35□□□□□ -0.91
VPS50-208ENST00000458707 MCM9Q9NXL9 1143 aa9.35□□□□□ -0.91
VPS50-208ENST00000458707 BTNL10A8MVZ5 291 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 BUB1O43683 1085 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 TLR2O60603 784 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 PRDX5P30044 214 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 ATP6V1AP38606 617 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 MDH1P40925 334 aaKnown RBP9.34□□□□□ -0.91
VPS50-208ENST00000458707 ATP1A2P50993 1020 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 NAPAP54920 295 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 GUCY2DQ02846 1103 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 ITGB3BPQ13352 177 aaPredicted RBP9.34□□□□□ -0.91
VPS50-208ENST00000458707 PLCB4Q15147 1175 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 LETM2Q2VYF4 491 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 KCTD16Q68DU8 428 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 PPP4R3AQ6IN85 833 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 CLEC4GQ6UXB4 293 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 LRIG3Q6UXM1 1119 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 CACNA2D4Q7Z3S7 1137 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 ANKRD13CQ8N6S4 541 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 C3orf20Q8ND61 904 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 ZNF473Q8WTR7 871 aaKnown RBP9.34□□□□□ -0.91
VPS50-208ENST00000458707 NGLY1Q96IV0 654 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 TMEM47Q9BQJ4 181 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 LRRC27Q9C0I9 530 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 PLCB1Q9NQ66 1216 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 BTG4Q9NY30 223 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 SLAIN2Q9P270 581 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 ZNF652Q9Y2D9 606 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 SMCO2A6NFE2 343 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 ZSCAN5CA6NGD5 496 aaPredicted RBP9.34□□□□□ -0.91
VPS50-208ENST00000458707 KLRF2D3W0D1 207 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 PALMO75781 387 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 KIAA0754O94854 1291 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 HIBADHP31937 336 aaKnown RBP9.34□□□□□ -0.91
VPS50-208ENST00000458707 MARSP56192 900 aaKnown RBP9.34□□□□□ -0.91
VPS50-208ENST00000458707 DRP2Q13474 957 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 PDIA5Q14554 519 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 SLC18A3Q16572 532 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 ERFEQ4G0M1 354 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 SLC10A5Q5PT55 438 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 SFMBT2Q5VUG0 894 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 USP38Q8NB14 1042 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 MYCBPAPQ8TBZ2 947 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 RAD54LQ92698 747 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 CABS1Q96KC9 395 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 TSG101Q99816 390 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 TACO1Q9BSH4 297 aaKnown RBP9.34□□□□□ -0.91
VPS50-208ENST00000458707 ISCUQ9H1K1 167 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 RABEP2Q9H5N1 569 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 TMBIM4Q9HC24 238 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.34□□□□□ -0.91
VPS50-208ENST00000458707 ATP6V0A2Q9Y487 856 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 CAPN7Q9Y6W3 813 aa9.34□□□□□ -0.91
VPS50-208ENST00000458707 SNED1Q8TER0 1413 aa9.33□□□□□ -0.92
VPS50-208ENST00000458707 ATP8B3O60423 1300 aa9.33□□□□□ -0.92
VPS50-208ENST00000458707 IRS2Q9Y4H2 1338 aa9.33□□□□□ -0.92
VPS50-208ENST00000458707 USP17L3A6NCW0 530 aa9.33□□□□□ -0.92
VPS50-208ENST00000458707 USP17L4A6NCW7 530 aa9.33□□□□□ -0.92
VPS50-208ENST00000458707 MPHOSPH10O00566 681 aaKnown RBP9.33□□□□□ -0.92
VPS50-208ENST00000458707 SLC34A2O95436 690 aa9.33□□□□□ -0.92
VPS50-208ENST00000458707 FAM107AO95990 144 aa9.33□□□□□ -0.92
VPS50-208ENST00000458707 TSPY3P0CV98 308 aa9.33□□□□□ -0.92
VPS50-208ENST00000458707 TSPY8P0CW00 308 aa9.33□□□□□ -0.92
VPS50-208ENST00000458707 KLRC1P26715 233 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms