RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 ABCB6Q9NP58 842 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 CCDC177Q9NQR7 707 aaPredicted RBP7.07□□□□□ -1.28
MCF2-205ENST00000437564 CNGB3Q9NQW8 809 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 CCDC87Q9NVE4 849 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 FAIMQ9NVQ4 179 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 ZC3H7BQ9UGR2 993 aaKnown RBP7.07□□□□□ -1.28
MCF2-205ENST00000437564 ZMYND8Q9ULU4 1186 aaPredicted RBP7.07□□□□□ -1.28
MCF2-205ENST00000437564 SAMM50Q9Y512 469 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 NUMBLQ9Y6R0 609 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 FAM47E-STBD1D6RA91 191 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 CDK2AP1O14519 115 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 SSBP05455 408 aaKnown RBP eCLIP7.06□□□□□ -1.28
MCF2-205ENST00000437564 ITGA2BP08514 1039 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 EPB41P11171 864 aaKnown RBP7.06□□□□□ -1.28
MCF2-205ENST00000437564 ATP6V1C1P21283 382 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 HMOX2P30519 316 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 ETFBP38117 255 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 SCTRP47872 440 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 COPAP53621 1224 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 EMP3P54852 163 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 CHMP4BP1P59074 171 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 TMF1P82094 1093 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 HPCAP84074 193 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 PCSK7Q16549 785 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 ANKRD39Q53RE8 183 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 ANKRD20A2Q5SQ80 823 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 SYCP2LQ5T4T6 812 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 ANKRD20A1Q5TYW2 823 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 ANKRD20A3Q5VUR7 823 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 NAA35Q5VZE5 725 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 OR52E8Q6IFG1 317 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 PPP4R3AQ6IN85 833 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 ANO7Q6IWH7 933 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 C8orf74Q6P047 294 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 TRIM65Q6PJ69 517 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 ZNF600Q6ZNG1 722 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 PTF1AQ7RTS3 328 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 EHBP1Q8NDI1 1231 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 OR7G1Q8NGA0 311 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 PXYLP1Q8TE99 480 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 STARD8Q92502 1023 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 TRIM8Q9BZR9 551 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 PLEKHA5Q9HAU0 1116 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 AVENQ9NQS1 362 aaPredicted RBP7.06□□□□□ -1.28
MCF2-205ENST00000437564 ATP8A2Q9NTI2 1148 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 CTTNBP2NLQ9P2B4 639 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 EVLQ9UI08 416 aaPredicted RBP7.06□□□□□ -1.28
MCF2-205ENST00000437564 SLC4A4Q9Y6R1 1079 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 ATAD2BQ9ULI0 1458 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 NSD2O96028 1365 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 ZNF521Q96K83 1311 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 POM121CA8CG34 1229 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 NOTOA8MTQ0 251 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 ERVV-2B6SEH9 535 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 IGF2BP3O00425 579 aaKnown RBP eCLIP7.06□□□□□ -1.28
MCF2-205ENST00000437564 SPTLC1O15269 473 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 WFS1O76024 890 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 FAM107AO95990 144 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 MYCP01106 439 aaPredicted RBP7.06□□□□□ -1.28
MCF2-205ENST00000437564 GLULP15104 373 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 ATP2A2P16615 1042 aaKnown RBP7.06□□□□□ -1.28
MCF2-205ENST00000437564 ZKSCAN1P17029 563 aaPredicted RBP7.06□□□□□ -1.28
MCF2-205ENST00000437564 DDX5P17844 614 aaKnown RBP7.06□□□□□ -1.28
MCF2-205ENST00000437564 PPP2R1AP30153 589 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 HSD17B7P56937 341 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 GNA13Q14344 377 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 PSMD6Q15008 389 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 TOMM20Q15388 145 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 METTL11BQ5VVY1 283 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 TSHZ3Q63HK5 1081 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 FAM173BQ6P4H8 233 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 TMEM154Q6P9G4 183 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 PPP1R42Q7Z4L9 355 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.06□□□□□ -1.28
MCF2-205ENST00000437564 MDM1Q8TC05 714 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 ZNF473Q8WTR7 871 aaKnown RBP7.06□□□□□ -1.28
MCF2-205ENST00000437564 GBP5Q96PP8 586 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 ALPK1Q96QP1 1244 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 LPIN3Q9BQK8 851 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 TTPALQ9BTX7 342 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 API5Q9BZZ5 524 aaKnown RBP7.06□□□□□ -1.28
MCF2-205ENST00000437564 ANKZF1Q9H8Y5 726 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 SAMSN1Q9NSI8 373 aaKnown RBP7.06□□□□□ -1.28
MCF2-205ENST00000437564 BTBD7Q9P203 1132 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 PCDHGA10Q9Y5H3 936 aa7.06□□□□□ -1.28
MCF2-205ENST00000437564 NAIPQ13075 1403 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 ITIH6Q6UXX5 1313 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 MACROD2A1Z1Q3 448 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 ELL2O00472 640 aaPredicted RBP7.05□□□□□ -1.28
MCF2-205ENST00000437564 NDC80O14777 642 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 MCF2LO15068 1137 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 RASA4O43374 803 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 KLHL41O60662 606 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 GUCY1B2O75343 617 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 DGKIO75912 1065 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 GLRX3O76003 335 aaKnown RBP7.05□□□□□ -1.28
MCF2-205ENST00000437564 ZNF202O95125 648 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 FKBP9O95302 570 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 LMNAP02545 664 aaKnown RBP7.05□□□□□ -1.28
MCF2-205ENST00000437564 ACADSP16219 412 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms