RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 EMILIN3Q9NT22 766 aa15.05■□□□□ -0
COL6A3-207ENST00000433762 LOXHD1Q8IVV2 1947 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 TLR2O60603 784 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 PPFIA4O75335 1185 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 MYBL2P10244 700 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 GGCXP38435 758 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 SLC1A4P43007 532 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 TDRD12Q587J7 1177 aaKnown RBP15.04■□□□□ -0
COL6A3-207ENST00000433762 SRLQ86TD4 932 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 MREGQ8N565 214 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 FAM76AQ8TAV0 307 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 SMCR8Q8TEV9 937 aaPredicted RBP15.04■□□□□ -0
COL6A3-207ENST00000433762 FAM20AQ96MK3 541 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 LRRC1Q9BTT6 524 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 LSM14BQ9BX40 385 aaKnown RBP15.04■□□□□ -0
COL6A3-207ENST00000433762 USP40Q9NVE5 1235 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 POLRMTO00411 1230 aaKnown RBP15.04■□□□□ -0
COL6A3-207ENST00000433762 PDXKO00764 312 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 SLC16A3O15427 465 aaKnown RBP15.04■□□□□ -0
COL6A3-207ENST00000433762 IRX5P78411 483 aaPredicted RBP15.04■□□□□ -0
COL6A3-207ENST00000433762 HDLBPQ00341 1268 aaKnown RBP15.04■□□□□ -0
COL6A3-207ENST00000433762 GFPT1Q06210 699 aaPredicted RBP15.04■□□□□ -0
COL6A3-207ENST00000433762 PICALMQ13492 652 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 LRRC41Q15345 812 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 C8orf74Q6P047 294 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 NFRKBQ6P4R8 1299 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 IFT20Q8IY31 132 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 TEKT1Q969V4 418 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 KANSL2Q9H9L4 492 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 GDF3Q9NR23 364 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 RNF216Q9NWF9 866 aaPredicted RBP15.04■□□□□ -0
COL6A3-207ENST00000433762 KIAA1024Q9UPX6 916 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 DAAM1Q9Y4D1 1078 aa15.04■□□□□ -0
COL6A3-207ENST00000433762 ZNF646O15015 1829 aaPredicted RBP15.03■□□□□ -0
COL6A3-207ENST00000433762 USP17L10C9JJH3 530 aa15.03■□□□□ -0
COL6A3-207ENST00000433762 RPA1P27694 616 aa15.03■□□□□ -0
COL6A3-207ENST00000433762 RASSF7Q02833 373 aa15.03■□□□□ -0
COL6A3-207ENST00000433762 MEI1Q5TIA1 1274 aa15.03■□□□□ -0
COL6A3-207ENST00000433762 EPM2AIP1Q7L775 607 aaPredicted RBP15.03■□□□□ -0
COL6A3-207ENST00000433762 METTL14Q9HCE5 456 aaKnown RBP15.03■□□□□ -0
COL6A3-207ENST00000433762 COL2A1P02458 1487 aaPredicted RBP15.03■□□□□ -0
COL6A3-207ENST00000433762 GTPBP10A4D1E9 387 aaKnown RBP15.03■□□□□ -0
COL6A3-207ENST00000433762 GFPT2O94808 682 aa15.03■□□□□ -0
COL6A3-207ENST00000433762 CIITAP33076 1130 aa15.03■□□□□ -0
COL6A3-207ENST00000433762 PRKCIP41743 596 aa15.03■□□□□ -0
COL6A3-207ENST00000433762 SPIRE1Q08AE8 756 aa15.03■□□□□ -0
COL6A3-207ENST00000433762 ASIC2Q16515 512 aa15.03■□□□□ -0
COL6A3-207ENST00000433762 NFIL3Q16649 462 aa15.03■□□□□ -0
COL6A3-207ENST00000433762 QRICH1Q2TAL8 776 aa15.03■□□□□ -0
COL6A3-207ENST00000433762 HERC4Q5GLZ8 1057 aaPredicted RBP15.03■□□□□ -0
COL6A3-207ENST00000433762 TTBK2Q6IQ55 1244 aa15.03■□□□□ -0
COL6A3-207ENST00000433762 CDC42EP5Q6NZY7 148 aa15.03■□□□□ -0
COL6A3-207ENST00000433762 LRRC31Q6UY01 552 aa15.03■□□□□ -0
COL6A3-207ENST00000433762 CERS5Q8N5B7 392 aa15.03■□□□□ -0
COL6A3-207ENST00000433762 SYT2Q8N9I0 419 aaPredicted RBP15.03■□□□□ -0
COL6A3-207ENST00000433762 GLIS3Q8NEA6 775 aa15.03■□□□□ -0
COL6A3-207ENST00000433762 ETNPPLQ8TBG4 499 aa15.03■□□□□ -0
COL6A3-207ENST00000433762 FAM107BQ9H098 131 aa15.03■□□□□ -0
COL6A3-207ENST00000433762 LRRC4BQ9NT99 713 aa15.03■□□□□ -0
COL6A3-207ENST00000433762 DMGDHQ9UI17 866 aaKnown RBP15.03■□□□□ -0
COL6A3-207ENST00000433762 SALL4Q9UJQ4 1053 aa15.03■□□□□ -0
COL6A3-207ENST00000433762 ADAMTSL1Q8N6G6 1762 aa15.02■□□□□ -0
COL6A3-207ENST00000433762 GOLGA6CA6NDK9 693 aa15.02■□□□□ -0
COL6A3-207ENST00000433762 CALUO43852 315 aaPredicted RBP15.02■□□□□ -0
COL6A3-207ENST00000433762 GOLGA6DP0CG33 693 aa15.02■□□□□ -0
COL6A3-207ENST00000433762 POLR2FP61218 127 aaKnown RBP15.02■□□□□ -0
COL6A3-207ENST00000433762 TRAF1Q13077 416 aa15.02■□□□□ -0
COL6A3-207ENST00000433762 PAK2Q13177 524 aa15.02■□□□□ -0
COL6A3-207ENST00000433762 ADAM9Q13443 819 aa15.02■□□□□ -0
COL6A3-207ENST00000433762 GMCL1P1Q8NEA9 526 aa15.02■□□□□ -0
COL6A3-207ENST00000433762 ZDHHC15Q96MV8 337 aa15.02■□□□□ -0
COL6A3-207ENST00000433762 ZC3H12CQ9C0D7 883 aaKnown RBP15.02■□□□□ -0
COL6A3-207ENST00000433762 GOLGA6AQ9NYA3 693 aa15.02■□□□□ -0
COL6A3-207ENST00000433762 INTUQ9ULD6 942 aa15.02■□□□□ -0
COL6A3-207ENST00000433762 E9PMD0 336 aa15.02□□□□□ -0.01
COL6A3-207ENST00000433762 EPS15P42566 896 aa15.02□□□□□ -0.01
COL6A3-207ENST00000433762 KLHL30Q0D2K2 578 aa15.02□□□□□ -0.01
COL6A3-207ENST00000433762 EMC10Q5UCC4 262 aa15.02□□□□□ -0.01
COL6A3-207ENST00000433762 APOBEC3HQ6NTF7 200 aaKnown RBP15.02□□□□□ -0.01
COL6A3-207ENST00000433762 SND1Q7KZF4 910 aaKnown RBP eCLIP15.02□□□□□ -0.01
COL6A3-207ENST00000433762 FMNL3Q8IVF7 1028 aa15.02□□□□□ -0.01
COL6A3-207ENST00000433762 PCDHA1Q9Y5I3 950 aa15.02□□□□□ -0.01
COL6A3-207ENST00000433762 POTEB3A0JP26 581 aa15.01□□□□□ -0.01
COL6A3-207ENST00000433762 POTECB2RU33 542 aa15.01□□□□□ -0.01
COL6A3-207ENST00000433762 APBA3O96018 575 aa15.01□□□□□ -0.01
COL6A3-207ENST00000433762 RPL13P26373 211 aaKnown RBP15.01□□□□□ -0.01
COL6A3-207ENST00000433762 SREBF1P36956 1147 aa15.01□□□□□ -0.01
COL6A3-207ENST00000433762 SKOR1P84550 965 aa15.01□□□□□ -0.01
COL6A3-207ENST00000433762 DDR1Q08345 913 aa15.01□□□□□ -0.01
COL6A3-207ENST00000433762 KNOP1Q1ED39 458 aaKnown RBP15.01□□□□□ -0.01
COL6A3-207ENST00000433762 POTEBQ6S5H4 581 aa15.01□□□□□ -0.01
COL6A3-207ENST00000433762 CD302Q8IX05 232 aa15.01□□□□□ -0.01
COL6A3-207ENST00000433762 WHAMMQ8TF30 809 aa15.01□□□□□ -0.01
COL6A3-207ENST00000433762 GMCL1Q96IK5 515 aa15.01□□□□□ -0.01
COL6A3-207ENST00000433762 PBKQ96KB5 322 aa15.01□□□□□ -0.01
COL6A3-207ENST00000433762 INPP4AQ96PE3 977 aaPredicted RBP15.01□□□□□ -0.01
COL6A3-207ENST00000433762 POLR3CQ9BUI4 534 aaPredicted RBP15.01□□□□□ -0.01
COL6A3-207ENST00000433762 IDI2Q9BXS1 227 aa15.01□□□□□ -0.01
COL6A3-207ENST00000433762 NLRC4Q9NPP4 1024 aa15.01□□□□□ -0.01
COL6A3-207ENST00000433762 RRP15Q9Y3B9 282 aaKnown RBP15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms