RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CHD2O14647 1828 aaKnown RBP5.29□□□□□ -1.56
HMGB3-203ENST00000430118 PNPLA6Q8IY17 1366 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 LMTK2Q8IWU2 1503 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.28□□□□□ -1.56
HMGB3-203ENST00000430118 SHISA3A0PJX4 238 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 TRAF5O00463 557 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 CBX7O95931 251 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 MYL1P05976 194 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 PLS3P13797 630 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 IFNGR1P15260 489 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 VCAM1P19320 739 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 YY1P25490 414 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 CLCN7P51798 805 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 KPNA1P52294 538 aaPredicted RBP5.28□□□□□ -1.56
HMGB3-203ENST00000430118 ERVK-21P61565 698 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 LACTBP83111 547 aaPredicted RBP5.28□□□□□ -1.56
HMGB3-203ENST00000430118 GFOD2Q3B7J2 385 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 INAVAQ3KP66 663 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 BEND4Q6ZU67 534 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 ZAR1Q86SH2 424 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 CCDC103Q8IW40 242 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 MAGEB6Q8N7X4 407 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 GATA6Q92908 595 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 SMAD5Q99717 465 aaKnown RBP5.28□□□□□ -1.56
HMGB3-203ENST00000430118 DUSP15Q9H1R2 295 aaPredicted RBP5.28□□□□□ -1.56
HMGB3-203ENST00000430118 LUC7LQ9NQ29 371 aaKnown RBP5.28□□□□□ -1.56
HMGB3-203ENST00000430118 GPRC5CQ9NQ84 441 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 AASDHPPTQ9NRN7 309 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 PNMA8BQ9ULN7 279 aaPredicted RBP5.28□□□□□ -1.56
HMGB3-203ENST00000430118 SPHKAPQ2M3C7 1700 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 KIF15Q9NS87 1388 aa5.28□□□□□ -1.56
HMGB3-203ENST00000430118 CNTNAP4Q9C0A0 1308 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 NPHP3-ACAD11A0A0J9YXS1 232 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 ZNF891A8MT65 544 aaPredicted RBP5.27□□□□□ -1.57
HMGB3-203ENST00000430118 MEIS1O00470 390 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 FGF10O15520 208 aaPredicted RBP5.27□□□□□ -1.57
HMGB3-203ENST00000430118 PEX14O75381 377 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 LEFTY1O75610 366 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 PRKD3O94806 890 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 TBC1D8O95759 1140 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 CFBP00751 764 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 SOD2P04179 222 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 GRK2P25098 689 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 TPP2P29144 1249 aaPredicted RBP5.27□□□□□ -1.57
HMGB3-203ENST00000430118 GRK3P35626 688 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 ID4P47928 161 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 RHBDL3P58872 404 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 PHC1P78364 1004 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 ST5P78524 1137 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 KLF1Q13351 362 aaPredicted RBP5.27□□□□□ -1.57
HMGB3-203ENST00000430118 RTP2Q5QGT7 225 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 GPR158Q5T848 1215 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 MYOM3Q5VTT5 1437 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 OVCH1Q7RTY7 1134 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 EXOC8Q8IYI6 725 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 SAMD3Q8N6K7 520 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 RCBTB1Q8NDN9 531 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 TTC8Q8TAM2 541 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 MEGF10Q96KG7 1140 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 HEXIM2Q96MH2 286 aaKnown RBP5.27□□□□□ -1.57
HMGB3-203ENST00000430118 NUP88Q99567 741 aaPredicted RBP5.27□□□□□ -1.57
HMGB3-203ENST00000430118 RTFDC1Q9BY42 306 aaPredicted RBP5.27□□□□□ -1.57
HMGB3-203ENST00000430118 KCNF1Q9H3M0 494 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 LGR6Q9HBX8 967 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 ARNT2Q9HBZ2 717 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 CLEC1BQ9P126 229 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 TMEFF2Q9UIK5 374 aaPredicted RBP5.27□□□□□ -1.57
HMGB3-203ENST00000430118 ZNF180Q9UJW8 692 aa5.27□□□□□ -1.57
HMGB3-203ENST00000430118 TNKSO95271 1327 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 WASHC2AQ641Q2 1341 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 CNTNAP5Q8WYK1 1306 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 ATRNO75882 1429 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 ZFYVE9O95405 1425 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 MST1RQ04912 1400 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 RIMS2Q9UQ26 1411 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 CCDC66A2RUB6 948 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 FAM155AB1AL88 458 aaPredicted RBP5.26□□□□□ -1.57
HMGB3-203ENST00000430118 WDR64B1ANS9 1081 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 H7BY64 318 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 ARNTLO00327 626 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 MSCO60682 206 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 EIF5BO60841 1220 aaKnown RBP5.26□□□□□ -1.57
HMGB3-203ENST00000430118 ATP2A2P16615 1042 aaKnown RBP5.26□□□□□ -1.57
HMGB3-203ENST00000430118 LSAMPQ13449 338 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 BIRC2Q13490 618 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 LRRC41Q15345 812 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 CRY1Q16526 586 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 GAB4Q2WGN9 574 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 TMPRSS7Q7RTY8 843 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 Q8N1Y9 231 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 CBARPQ8N350 705 aaPredicted RBP5.26□□□□□ -1.57
HMGB3-203ENST00000430118 COG1Q8WTW3 980 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 PMM1Q92871 262 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 TBC1D32Q96NH3 1257 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 PTCHD1Q96NR3 888 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 METTL22Q9BUU2 404 aaPredicted RBP5.26□□□□□ -1.57
HMGB3-203ENST00000430118 BOCQ9BWV1 1114 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 RHOBTB2Q9BYZ6 727 aa5.26□□□□□ -1.57
HMGB3-203ENST00000430118 CCDC8Q9H0W5 538 aaPredicted RBP5.26□□□□□ -1.57
HMGB3-203ENST00000430118 TCFL5Q9UL49 500 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms