RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 MKL1Q969V6 931 aa11.82□□□□□ -0.52
CUX1-205ENST00000425244 DCPSQ96C86 337 aaKnown RBP11.82□□□□□ -0.52
CUX1-205ENST00000425244 DRC1Q96MC2 740 aa11.82□□□□□ -0.52
CUX1-205ENST00000425244 NDST4Q9H3R1 872 aa11.82□□□□□ -0.52
CUX1-205ENST00000425244 PSTPIP2Q9H939 334 aa11.82□□□□□ -0.52
CUX1-205ENST00000425244 PDE11AQ9HCR9 933 aa11.82□□□□□ -0.52
CUX1-205ENST00000425244 RIC8AQ9NPQ8 531 aa11.82□□□□□ -0.52
CUX1-205ENST00000425244 SAR1BQ9Y6B6 198 aa11.82□□□□□ -0.52
CUX1-205ENST00000425244 TBC1D12O60347 775 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 MMP14P50281 582 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 CACNB1Q02641 598 aaPredicted RBP11.81□□□□□ -0.52
CUX1-205ENST00000425244 RAD51AP2Q09MP3 1159 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 USH1GQ495M9 461 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 FAM83BQ5T0W9 1011 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 TRAPPC11Q7Z392 1133 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 SULF1Q8IWU6 871 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 EHBP1Q8NDI1 1231 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 DEF6Q9H4E7 631 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 JADE2Q9NQC1 790 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 PVALEFA0A1B0GWK0 134 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 USP17L15C9J2P7 530 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 USP17L13C9JLJ4 530 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 USP17L11C9JVI0 530 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 USP17L18D6R9N7 530 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 USP17L22D6RA61 530 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 USP17L17D6RBQ6 530 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 USP17L19D6RCP7 530 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 USP17L20D6RJB6 530 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 H3BQF6 201 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 BMP3P12645 472 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 MRPL12P52815 198 aaKnown RBP11.81□□□□□ -0.52
CUX1-205ENST00000425244 USP17L24Q0WX57 530 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 KIF5AQ12840 1032 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 MAPK8IP2Q13387 824 aaPredicted RBP11.81□□□□□ -0.52
CUX1-205ENST00000425244 USP17L6PQ6QN14 398 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 HDXQ7Z353 690 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 SMCR8Q8TEV9 937 aaPredicted RBP11.81□□□□□ -0.52
CUX1-205ENST00000425244 ERGIC2Q96RQ1 377 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 MMS19Q96T76 1030 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 RAB21Q9UL25 225 aa11.81□□□□□ -0.52
CUX1-205ENST00000425244 GREB1LQ9C091 1923 aaPredicted RBP11.8□□□□□ -0.52
CUX1-205ENST00000425244 EIF3CLB5ME19 914 aaKnown RBP11.8□□□□□ -0.52
CUX1-205ENST00000425244 RRAGAQ7L523 313 aa11.8□□□□□ -0.52
CUX1-205ENST00000425244 CCDC170Q8IYT3 715 aa11.8□□□□□ -0.52
CUX1-205ENST00000425244 CCDC155Q8N6L0 562 aa11.8□□□□□ -0.52
CUX1-205ENST00000425244 NEK11Q8NG66 645 aa11.8□□□□□ -0.52
CUX1-205ENST00000425244 EIF3CQ99613 913 aaKnown RBP11.8□□□□□ -0.52
CUX1-205ENST00000425244 TSG101Q99816 390 aa11.8□□□□□ -0.52
CUX1-205ENST00000425244 UBXN6Q9BZV1 441 aa11.8□□□□□ -0.52
CUX1-205ENST00000425244 ZHX3Q9H4I2 956 aa11.8□□□□□ -0.52
CUX1-205ENST00000425244 ZBTB5O15062 677 aa11.8□□□□□ -0.52
CUX1-205ENST00000425244 ZNF185O15231 689 aa11.8□□□□□ -0.52
CUX1-205ENST00000425244 PDIA5Q14554 519 aa11.8□□□□□ -0.52
CUX1-205ENST00000425244 MAN2A1Q16706 1144 aa11.8□□□□□ -0.52
CUX1-205ENST00000425244 NELFCDQ8IXH7 590 aa11.8□□□□□ -0.52
CUX1-205ENST00000425244 GUF1Q8N442 669 aaKnown RBP11.8□□□□□ -0.52
CUX1-205ENST00000425244 HAS1Q92839 578 aa11.8□□□□□ -0.52
CUX1-205ENST00000425244 IFIH1Q9BYX4 1025 aaKnown RBP11.8□□□□□ -0.52
CUX1-205ENST00000425244 GOPCQ9HD26 462 aa11.8□□□□□ -0.52
CUX1-205ENST00000425244 PCDHA12Q9UN75 941 aa11.8□□□□□ -0.52
CUX1-205ENST00000425244 CLEC11AQ9Y240 323 aa11.8□□□□□ -0.52
CUX1-205ENST00000425244 CENPFP49454 3210 aa11.8□□□□□ -0.52
CUX1-205ENST00000425244 AKR1B10O60218 316 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 GRIN3BO60391 1043 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 FGFR1OPO95684 399 aaKnown RBP11.79□□□□□ -0.52
CUX1-205ENST00000425244 EPHX2P34913 555 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 TUBB4BP68371 445 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 ZNF526Q8TF50 670 aaPredicted RBP11.79□□□□□ -0.52
CUX1-205ENST00000425244 DCAF4Q8WV16 495 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 HNRNPLLQ8WVV9 542 aaKnown RBP11.79□□□□□ -0.52
CUX1-205ENST00000425244 FBXO28Q9NVF7 368 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 TMX2Q9Y320 296 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 NPHP3-ACAD11A0A0J9YXS1 232 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 LRRC53A6NM62 1247 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 E9PMD0 336 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 TRAF5O00463 557 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 MAP2K7O14733 419 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 ZNF263O14978 683 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 ZMYND10O75800 440 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 CYP2C19P33261 490 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 EIF4A3P38919 411 aaKnown RBP11.79□□□□□ -0.52
CUX1-205ENST00000425244 COASYQ13057 564 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 SPP2Q13103 211 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 GPS2Q13227 327 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 MTMR2Q13614 643 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 CCDC40Q4G0X9 1142 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 TMEM119Q4V9L6 283 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 DCAF15Q66K64 600 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 PPP4R3AQ6IN85 833 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 CACNA2D4Q7Z3S7 1137 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 MYOCDQ8IZQ8 938 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 MLXIPQ9HAP2 919 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 PANK4Q9NVE7 773 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 KIAA1024Q9UPX6 916 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 SIK3Q9Y2K2 1263 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 A0A1W2PQJ5 194 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 GLTPD2A6NH11 291 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 STAT3P40763 770 aa11.79□□□□□ -0.52
CUX1-205ENST00000425244 TNNT3P45378 269 aaPredicted RBP11.79□□□□□ -0.52
CUX1-205ENST00000425244 KIF11P52732 1056 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms