RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 MAB21L3Q8N8X9 362 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 FGD4Q96M96 766 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 CLIC6Q96NY7 704 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 GBP5Q96PP8 586 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 TMEM47Q9BQJ4 181 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 PNMA6FA0A0J9YX94 578 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 LAD1O00515 517 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 KIF22Q14807 665 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 KARSQ15046 597 aaKnown RBP10.71□□□□□ -0.69
USP54-205ENST00000424265 ANGEL2Q5VTE6 544 aaKnown RBP10.71□□□□□ -0.69
USP54-205ENST00000424265 KRI1Q8N9T8 703 aaKnown RBP10.71□□□□□ -0.69
USP54-205ENST00000424265 ZC3H15Q8WU90 426 aaKnown RBP10.71□□□□□ -0.69
USP54-205ENST00000424265 LY9Q9HBG7 655 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 IFNKQ9P0W0 207 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 WDR37Q9Y2I8 494 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 SHANK3Q9BYB0 1731 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 ANKRD36CQ5JPF3 1778 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 SMCO2A6NFE2 343 aa10.71□□□□□ -0.7
USP54-205ENST00000424265 TMCC1O94876 653 aa10.71□□□□□ -0.7
USP54-205ENST00000424265 FOXD4Q12950 439 aaPredicted RBP10.71□□□□□ -0.7
USP54-205ENST00000424265 TCERG1LQ5VWI1 586 aa10.71□□□□□ -0.7
USP54-205ENST00000424265 APBB1IPQ7Z5R6 666 aaPredicted RBP10.71□□□□□ -0.7
USP54-205ENST00000424265 NLRX1Q86UT6 975 aa10.71□□□□□ -0.7
USP54-205ENST00000424265 ENAHQ8N8S7 591 aaPredicted RBP10.71□□□□□ -0.7
USP54-205ENST00000424265 MTMR14Q8NCE2 650 aa10.71□□□□□ -0.7
USP54-205ENST00000424265 NSUN7Q8NE18 718 aaKnown RBP10.71□□□□□ -0.7
USP54-205ENST00000424265 ZCWPW1Q9H0M4 648 aa10.71□□□□□ -0.7
USP54-205ENST00000424265 MAGEC2Q9UBF1 373 aaPredicted RBP10.71□□□□□ -0.7
USP54-205ENST00000424265 E7EVH7 732 aa10.71□□□□□ -0.7
USP54-205ENST00000424265 FGFR1OPO95684 399 aaKnown RBP10.71□□□□□ -0.7
USP54-205ENST00000424265 EPHX2P34913 555 aa10.71□□□□□ -0.7
USP54-205ENST00000424265 ATP11AP98196 1134 aa10.71□□□□□ -0.7
USP54-205ENST00000424265 ADCY1Q08828 1119 aa10.71□□□□□ -0.7
USP54-205ENST00000424265 ORC2Q13416 577 aaPredicted RBP10.71□□□□□ -0.7
USP54-205ENST00000424265 HAUS3Q68CZ6 603 aa10.71□□□□□ -0.7
USP54-205ENST00000424265 SARM1Q6SZW1 724 aa10.71□□□□□ -0.7
USP54-205ENST00000424265 FBXL16Q8N461 479 aa10.71□□□□□ -0.7
USP54-205ENST00000424265 PSTPIP2Q9H939 334 aa10.71□□□□□ -0.7
USP54-205ENST00000424265 DNAJC8O75937 253 aaPredicted RBP10.7□□□□□ -0.7
USP54-205ENST00000424265 RNF8O76064 485 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 EIF4BP23588 611 aaKnown RBP10.7□□□□□ -0.7
USP54-205ENST00000424265 PLCD1P51178 756 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 CACNB3P54284 484 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 LACTBP83111 547 aaPredicted RBP10.7□□□□□ -0.7
USP54-205ENST00000424265 BRDTQ58F21 947 aaPredicted RBP10.7□□□□□ -0.7
USP54-205ENST00000424265 UIMC1Q96RL1 719 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 DEFB129Q9H1M3 183 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 WDR46O15213 610 aaKnown RBP10.7□□□□□ -0.7
USP54-205ENST00000424265 CAPN15O75808 1086 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 TROVE2P10155 538 aaKnown RBP eCLIP10.7□□□□□ -0.7
USP54-205ENST00000424265 ADD1P35611 737 aaKnown RBP10.7□□□□□ -0.7
USP54-205ENST00000424265 PSMC1P62191 440 aaKnown RBP10.7□□□□□ -0.7
USP54-205ENST00000424265 ODF2Q5BJF6 829 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 TTC38Q5R3I4 469 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 E4F1Q66K89 784 aaPredicted RBP10.7□□□□□ -0.7
USP54-205ENST00000424265 CDCA2Q69YH5 1023 aaPredicted RBP10.7□□□□□ -0.7
USP54-205ENST00000424265 IRX2Q9BZI1 471 aaPredicted RBP10.7□□□□□ -0.7
USP54-205ENST00000424265 MTMR4Q9NYA4 1195 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 FAM184BQ9ULE4 1060 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 CETN3O15182 167 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 CYP11B2P19099 503 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 ATP4AP20648 1035 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 ANO1Q5XXA6 986 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 NOSTRINQ8IVI9 506 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 MAIP1Q8WWC4 291 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 PHKBQ93100 1093 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 PPP1R12CQ9BZL4 782 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 CUTAO60888 179 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 TSNAXIP1Q2TAA8 658 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 BEND6Q5SZJ8 279 aaPredicted RBP10.7□□□□□ -0.7
USP54-205ENST00000424265 EHBP1Q8NDI1 1231 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 MAGEC3Q8TD91 643 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 DHX58Q96C10 678 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 CEP95Q96GE4 821 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 SPZ1Q9BXG8 430 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 EXOC1Q9NV70 894 aa10.7□□□□□ -0.7
USP54-205ENST00000424265 ATXN2Q99700 1313 aaKnown RBP10.69□□□□□ -0.7
USP54-205ENST00000424265 RASA1P20936 1047 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 AP3B2Q13367 1082 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 MIGA2Q7L4E1 593 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 ANKRD13AQ8IZ07 590 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 LZICQ8WZA0 190 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 OPTNQ96CV9 577 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 CCPG1Q9ULG6 757 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 BZW2Q9Y6E2 419 aaKnown RBP10.69□□□□□ -0.7
USP54-205ENST00000424265 ABCB11O95342 1321 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 PPP1R2P41236 205 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 ABL2P42684 1182 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 DMPKQ09013 629 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 TKFCQ3LXA3 575 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 SFMBT2Q5VUG0 894 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 HIBCHQ6NVY1 386 aaPredicted RBP10.69□□□□□ -0.7
USP54-205ENST00000424265 AMIGO3Q86WK7 504 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 ANKS4BQ8N8V4 417 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 PRMT6Q96LA8 375 aaPredicted RBP10.69□□□□□ -0.7
USP54-205ENST00000424265 SLF1Q9BQI6 1058 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 ADD3Q9UEY8 706 aaKnown RBP10.69□□□□□ -0.7
USP54-205ENST00000424265 PCDHA4Q9UN74 947 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 PCDHGC5Q9Y5F6 944 aa10.69□□□□□ -0.7
USP54-205ENST00000424265 PCDHA1Q9Y5I3 950 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms