RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 CDC25AP30304 524 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 WASHC5Q12768 1159 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 RAD9BQ6WBX8 426 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 TSEN2Q8NCE0 465 aaKnown RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 SEPT11Q9NVA2 429 aaKnown RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 RMND1Q9NWS8 449 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 KRIT1O00522 736 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 P4HA1P13674 534 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 GALNT4Q8N4A0 578 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 CCDC42Q96M95 316 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 TANGO6Q9C0B7 1094 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 ECHDC1Q9NTX5 307 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 STOML1Q9UBI4 398 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 ARL2BPQ9Y2Y0 163 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 NUTM2FA1L443 756 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 IARSP41252 1262 aaKnown RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 TESPA1A2RU30 521 aaPredicted RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 MCF2LO15068 1137 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 IL4RP24394 825 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 DENND2CQ68D51 928 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 RIBC1Q8N443 379 aaPredicted RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 WDR70Q9NW82 654 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 FBXL5Q9UKA1 691 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 FAM135BQ49AJ0 1406 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 RTP1P59025 263 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 EHHADHQ08426 723 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 LBRQ14739 615 aaKnown RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 GRAMD1BQ3KR37 738 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 RASSF3Q86WH2 238 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 NUTM2AQ8IVF1 878 aaPredicted RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 PYM1Q9BRP8 204 aaKnown RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 E9PCH4 1651 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 PTDSS1P48651 473 aaKnown RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 TAF12Q16514 161 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 EMBQ6PCB8 327 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 MYOCDQ8IZQ8 938 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 NUP85Q9BW27 656 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 AGAP1Q9UPQ3 857 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 SERPINB8P50452 374 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 CLEC4GQ6UXB4 293 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 STK32AQ8WU08 396 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 NOL3O60936 208 aaKnown RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 CNGA4Q8IV77 575 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 P3H4Q92791 437 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 EEF2KMTQ96G04 330 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 CCDC85AQ96PX6 553 aaPredicted RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 NPHP3-ACAD11A0A0J9YXS1 232 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 GOLGA8IPA6NC78 632 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 COPS2P61201 443 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 ANO1Q5XXA6 986 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 NFRKBQ6P4R8 1299 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 KDM7AQ6ZMT4 941 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 PMEPA1Q969W9 287 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 VTI1AQ96AJ9 217 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 TSG101Q99816 390 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 HAUS7Q99871 368 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 NUF2Q9BZD4 464 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 TEKT2Q9UIF3 430 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 HTR3EA5X5Y0 456 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 CRELD2Q6UXH1 353 aaPredicted RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 GNA14O95837 355 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 ACADSP16219 412 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 TNNC1P63316 161 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 EGFLAMQ63HQ2 1017 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 OLFM3Q96PB7 478 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 PHF24Q9UPV7 400 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 ACSL4O60488 711 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 MTIF2P46199 727 aaKnown RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 ADAM17P78536 824 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 KIF6Q6ZMV9 814 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 SLC12A5Q9H2X9 1139 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 C10orf88Q9H8K7 445 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 TPPPO94811 219 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 CYLC1P35663 651 aaPredicted RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 HP1BP3Q5SSJ5 553 aaPredicted RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 MTMR12Q9C0I1 747 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 THEGQ9P2T0 379 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 TMED5Q9Y3A6 229 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 MADDQ8WXG6 1647 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 CETN1Q12798 172 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 IFT122Q9HBG6 1241 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 DNAJC5BQ9UF47 199 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 MOCS3O95396 460 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 ERCC5P28715 1186 aaPredicted RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 RXRGP48443 463 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 RASSF7Q02833 373 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 TDRD12Q587J7 1177 aaKnown RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 WDR45BQ5MNZ6 344 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 C8orf58Q8NAV2 365 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 CAPSLQ8WWF8 208 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 GPC6Q9Y625 555 aaPredicted RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 CLIC4Q9Y696 253 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 ZNF521Q96K83 1311 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 CARSP49589 748 aaKnown RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 GFPT1Q06210 699 aaPredicted RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 TRIM16LQ309B1 348 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 HELBQ8NG08 1087 aaPredicted RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 TSNARE1Q96NA8 513 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 TAF1DQ9H5J8 278 aaPredicted RBP3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms