RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 IVLP07476 585 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 SPATA31C1P0DKV0 1188 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 SNAP25P60880 206 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 DDR1Q08345 913 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 PTPROQ16827 1216 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 CHADLQ6NUI6 762 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 FAM133AQ8N9E0 248 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 MBOAT7Q96N66 472 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 AIPL1Q9NZN9 384 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 POTEFA5A3E0 1075 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 FAM196BA6NMK8 535 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 MEIS2O14770 477 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 LDHCP07864 332 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 POTEIP0CG38 1075 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 GYS1P13807 737 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 TCP1P17987 556 aaKnown RBP10.88□□□□□ -0.67
SS18-203ENST00000415083 DNA2P51530 1060 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 RNASE9P60153 205 aaKnown RBP10.88□□□□□ -0.67
SS18-203ENST00000415083 JAG1P78504 1218 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 PSMD2Q13200 908 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 MAP9Q49MG5 647 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 FAM26FQ5R3K3 315 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 POTEGQ6S5H5 508 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 POTEEQ6S8J3 1075 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 EPM2AIP1Q7L775 607 aaPredicted RBP10.88□□□□□ -0.67
SS18-203ENST00000415083 CCDC84Q86UT8 332 aaPredicted RBP10.88□□□□□ -0.67
SS18-203ENST00000415083 LRRC57Q8N9N7 239 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 CNBD1Q8NA66 436 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 KCNQ5Q9NR82 932 aa10.88□□□□□ -0.67
SS18-203ENST00000415083 COL11A2P13942 1736 aaPredicted RBP10.88□□□□□ -0.67
SS18-203ENST00000415083 GOLGA6CA6NDK9 693 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 RSPH10B2B2RC85 870 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 TRAF5O00463 557 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 OPLAHO14841 1288 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 USO1O60763 962 aaKnown RBP10.87□□□□□ -0.67
SS18-203ENST00000415083 SERPING1P05155 500 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 PLA2G4BP0C869 781 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 RSPH10BP0C881 870 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 GOLGA6DP0CG33 693 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 FKBP3Q00688 224 aaKnown RBP10.87□□□□□ -0.67
SS18-203ENST00000415083 PTK2Q05397 1052 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 VPS72Q15906 364 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 SLC18A3Q16572 532 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 ASPRV1Q53RT3 343 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 PROM2Q8N271 834 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 ETNPPLQ8TBG4 499 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 SYN2Q92777 582 aaPredicted RBP10.87□□□□□ -0.67
SS18-203ENST00000415083 GOLGA6AQ9NYA3 693 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 ADAMTS1Q9UHI8 967 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 RAD51CO43502 376 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 FLT3P36888 993 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 ARID5AQ03989 594 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 UAP1Q16222 522 aaPredicted RBP10.87□□□□□ -0.67
SS18-203ENST00000415083 GJB7Q6PEY0 223 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 EDEM3Q9BZQ6 932 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 F8W031 263 aaPredicted RBP10.87□□□□□ -0.67
SS18-203ENST00000415083 H0YGN5 161 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 EIF3HO15372 352 aaKnown RBP eCLIP10.87□□□□□ -0.67
SS18-203ENST00000415083 MCM3P25205 808 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 EPHB4P54760 987 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 ERVK-9P63128 1117 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 GTF2IP78347 998 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 SKOR1P84550 965 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 GIT2Q14161 759 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 DNAJC21Q5F1R6 531 aaKnown RBP10.87□□□□□ -0.67
SS18-203ENST00000415083 KRT79Q5XKE5 535 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 KCTD16Q68DU8 428 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 CATSPER3Q86XQ3 398 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 RNF10Q8N5U6 811 aaKnown RBP10.87□□□□□ -0.67
SS18-203ENST00000415083 IQCDQ96DY2 449 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 DEF6Q9H4E7 631 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 EPB41L5Q9HCM4 733 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 NFS1Q9Y697 457 aa10.87□□□□□ -0.67
SS18-203ENST00000415083 hCG_1984214I3L0E3 225 aa10.86□□□□□ -0.67
SS18-203ENST00000415083 CCT5P48643 541 aa10.86□□□□□ -0.67
SS18-203ENST00000415083 CASP4P49662 377 aa10.86□□□□□ -0.67
SS18-203ENST00000415083 KCNH2Q12809 1159 aa10.86□□□□□ -0.67
SS18-203ENST00000415083 SFMBT2Q5VUG0 894 aa10.86□□□□□ -0.67
SS18-203ENST00000415083 ZNF713Q8N859 430 aaPredicted RBP10.86□□□□□ -0.67
SS18-203ENST00000415083 FAM76AQ8TAV0 307 aa10.86□□□□□ -0.67
SS18-203ENST00000415083 CWC15Q9P013 229 aaKnown RBP10.86□□□□□ -0.67
SS18-203ENST00000415083 GGA1Q9UJY5 639 aa10.86□□□□□ -0.67
SS18-203ENST00000415083 ZMYM2Q9UBW7 1377 aa10.86□□□□□ -0.67
SS18-203ENST00000415083 MEIS1O00470 390 aa10.86□□□□□ -0.67
SS18-203ENST00000415083 MAGEA9P43362 315 aa10.86□□□□□ -0.67
SS18-203ENST00000415083 ENOX2Q16206 610 aaKnown RBP10.86□□□□□ -0.67
SS18-203ENST00000415083 APOBEC3HQ6NTF7 200 aaKnown RBP10.86□□□□□ -0.67
SS18-203ENST00000415083 SH3BP5LQ7L8J4 393 aa10.86□□□□□ -0.67
SS18-203ENST00000415083 CYP2W1Q8TAV3 490 aa10.86□□□□□ -0.67
SS18-203ENST00000415083 RUBCNQ92622 972 aa10.86□□□□□ -0.67
SS18-203ENST00000415083 CCDC47Q96A33 483 aaKnown RBP10.86□□□□□ -0.67
SS18-203ENST00000415083 BORCS6Q96GS4 357 aa10.86□□□□□ -0.67
SS18-203ENST00000415083 RNPC3Q96LT9 517 aaKnown RBP10.86□□□□□ -0.67
SS18-203ENST00000415083 NOX5Q96PH1 765 aa10.86□□□□□ -0.67
SS18-203ENST00000415083 KRT12Q99456 494 aa10.86□□□□□ -0.67
SS18-203ENST00000415083 PCDHA12Q9UN75 941 aa10.86□□□□□ -0.67
SS18-203ENST00000415083 CYP3A7-CYP3A51PA0A087WV96 503 aa10.86□□□□□ -0.67
SS18-203ENST00000415083 FAM86B1E9PN63 330 aa10.86□□□□□ -0.67
SS18-203ENST00000415083 UBAP1LF5GYI3 381 aa10.86□□□□□ -0.67
SS18-203ENST00000415083 ZBTB5O15062 677 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms