RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 MSTO1Q9BUK6 570 aa18.76■□□□□ 0.59
PHRF1-202ENST00000413872 RAVER2Q9HCJ3 691 aaKnown RBP18.76■□□□□ 0.59
PHRF1-202ENST00000413872 RGS16O15492 202 aaPredicted RBP18.76■□□□□ 0.59
PHRF1-202ENST00000413872 LARGE1O95461 756 aa18.76■□□□□ 0.59
PHRF1-202ENST00000413872 ZBED6P86452 979 aa18.76■□□□□ 0.59
PHRF1-202ENST00000413872 TTLL4Q14679 1199 aa18.76■□□□□ 0.59
PHRF1-202ENST00000413872 AIFM3Q96NN9 605 aa18.76■□□□□ 0.59
PHRF1-202ENST00000413872 ACAD9Q9H845 621 aa18.76■□□□□ 0.59
PHRF1-202ENST00000413872 CAMTA2O94983 1202 aa18.76■□□□□ 0.59
PHRF1-202ENST00000413872 ITKQ08881 620 aa18.76■□□□□ 0.59
PHRF1-202ENST00000413872 MAP7Q14244 749 aa18.76■□□□□ 0.59
PHRF1-202ENST00000413872 CATSPER4Q7RTX7 472 aa18.76■□□□□ 0.59
PHRF1-202ENST00000413872 STMN2Q93045 179 aa18.76■□□□□ 0.59
PHRF1-202ENST00000413872 CCDC68Q9H2F9 335 aa18.76■□□□□ 0.59
PHRF1-202ENST00000413872 ZC3H13Q5T200 1668 aaKnown RBP18.75■□□□□ 0.59
PHRF1-202ENST00000413872 PTPRMP28827 1452 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 MAPK4P31152 587 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 PRR5LQ6MZQ0 368 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 EP400NLQ6ZTU2 488 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 LY9Q9HBG7 655 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 TOPORSQ9NS56 1045 aaPredicted RBP18.75■□□□□ 0.59
PHRF1-202ENST00000413872 PPFIA4O75335 1185 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 TOB2Q14106 344 aaPredicted RBP18.75■□□□□ 0.59
PHRF1-202ENST00000413872 CCDC170Q8IYT3 715 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 ARHGAP24Q8N264 748 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 SLC16A10Q8TF71 515 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 HOMER3Q9NSC5 361 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 SPATA31A5Q5VU36 1347 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 SPATA31A7Q8IWB4 1347 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 CNTNAP4Q9C0A0 1308 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 H7C0C1 242 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 SRGAP2BP0DMP2 458 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 HSPA6P17066 643 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 ATP5OP48047 213 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 TPD52P55327 224 aaPredicted RBP18.75■□□□□ 0.59
PHRF1-202ENST00000413872 SGMS1Q86VZ5 419 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 CDC25AP30304 524 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 ARHGAP4P98171 946 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 MESDQ14696 234 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 CCDC62Q6P9F0 684 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 CYB5R4Q7L1T6 521 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 CDKL2Q92772 493 aa18.75■□□□□ 0.59
PHRF1-202ENST00000413872 ALDH8A1Q9H2A2 487 aaPredicted RBP18.75■□□□□ 0.59
PHRF1-202ENST00000413872 USP17L15C9J2P7 530 aa18.74■□□□□ 0.59
PHRF1-202ENST00000413872 USP17L13C9JLJ4 530 aa18.74■□□□□ 0.59
PHRF1-202ENST00000413872 USP17L11C9JVI0 530 aa18.74■□□□□ 0.59
PHRF1-202ENST00000413872 USP17L18D6R9N7 530 aa18.74■□□□□ 0.59
PHRF1-202ENST00000413872 USP17L22D6RA61 530 aa18.74■□□□□ 0.59
PHRF1-202ENST00000413872 USP17L17D6RBQ6 530 aa18.74■□□□□ 0.59
PHRF1-202ENST00000413872 USP17L19D6RCP7 530 aa18.74■□□□□ 0.59
PHRF1-202ENST00000413872 USP17L20D6RJB6 530 aa18.74■□□□□ 0.59
PHRF1-202ENST00000413872 PHKA2P46019 1235 aa18.74■□□□□ 0.59
PHRF1-202ENST00000413872 USP17L24Q0WX57 530 aa18.74■□□□□ 0.59
PHRF1-202ENST00000413872 SEMA3FQ13275 785 aa18.74■□□□□ 0.59
PHRF1-202ENST00000413872 ZNF512BQ96KM6 892 aaPredicted RBP18.74■□□□□ 0.59
PHRF1-202ENST00000413872 NLRP4Q96MN2 994 aa18.74■□□□□ 0.59
PHRF1-202ENST00000413872 SETD1BQ9UPS6 1966 aaKnown RBP18.74■□□□□ 0.59
PHRF1-202ENST00000413872 SRGAP2CP0DJJ0 459 aa18.74■□□□□ 0.59
PHRF1-202ENST00000413872 CTNNA1P35221 906 aaKnown RBP18.74■□□□□ 0.59
PHRF1-202ENST00000413872 RASSF7Q02833 373 aa18.74■□□□□ 0.59
PHRF1-202ENST00000413872 PLCB4Q15147 1175 aa18.74■□□□□ 0.59
PHRF1-202ENST00000413872 C17orf53Q8N3J3 647 aaPredicted RBP18.74■□□□□ 0.59
PHRF1-202ENST00000413872 DNAJC24Q6P3W2 148 aa18.74■□□□□ 0.59
PHRF1-202ENST00000413872 ZBTB33Q86T24 672 aa18.74■□□□□ 0.59
PHRF1-202ENST00000413872 SMYD4Q8IYR2 804 aaPredicted RBP18.74■□□□□ 0.59
PHRF1-202ENST00000413872 MARCH10Q8NA82 808 aaPredicted RBP18.74■□□□□ 0.59
PHRF1-202ENST00000413872 BARHL2Q9NY43 387 aa18.74■□□□□ 0.59
PHRF1-202ENST00000413872 NXF1Q9UBU9 619 aaKnown RBP18.74■□□□□ 0.59
PHRF1-202ENST00000413872 NCOA3Q9Y6Q9 1424 aa18.74■□□□□ 0.59
PHRF1-202ENST00000413872 RESP18Q5W5W9 173 aa18.74■□□□□ 0.59
PHRF1-202ENST00000413872 RBM46Q8TBY0 533 aaKnown RBP18.74■□□□□ 0.59
PHRF1-202ENST00000413872 EPSTI1Q96J88 318 aa18.74■□□□□ 0.59
PHRF1-202ENST00000413872 PVALEFA0A1B0GWK0 134 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 EFCAB8A8MWE9 144 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 ENTPD3O75355 529 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 MAPK6Q16659 721 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 SLC44A5Q8NCS7 719 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 WDR70Q9NW82 654 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 RNF14Q9UBS8 474 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 CD2BP2O95400 341 aaKnown RBP18.73■□□□□ 0.59
PHRF1-202ENST00000413872 ARL4AP40617 200 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 EEF2KMTQ96G04 330 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 GRIN3BO60391 1043 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 MYL3P08590 195 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 ANXA13P27216 316 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 PEX3P56589 373 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 SNAP25P60880 206 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 SDCCAG8Q86SQ7 713 aaPredicted RBP18.73■□□□□ 0.59
PHRF1-202ENST00000413872 PROM2Q8N271 834 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 FTOQ9C0B1 505 aaKnown RBP eCLIP18.73■□□□□ 0.59
PHRF1-202ENST00000413872 C2orf40Q9H1Z8 148 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 SLC38A10Q9HBR0 1119 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 UBE2TQ9NPD8 197 aaPredicted RBP18.73■□□□□ 0.59
PHRF1-202ENST00000413872 DDIT3P35638 169 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 C12orf60Q5U649 245 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 KCNV1Q6PIU1 500 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 ATG9AQ7Z3C6 839 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 GRAMD1CQ8IYS0 662 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 NCAPGQ9BPX3 1015 aa18.73■□□□□ 0.59
PHRF1-202ENST00000413872 NDST4Q9H3R1 872 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms