RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 USP17L15C9J2P7 530 aa23.02■■□□□ 1.28
CTCF-202ENST00000401394 USP17L13C9JLJ4 530 aa23.02■■□□□ 1.28
CTCF-202ENST00000401394 USP17L11C9JVI0 530 aa23.02■■□□□ 1.28
CTCF-202ENST00000401394 USP17L18D6R9N7 530 aa23.02■■□□□ 1.28
CTCF-202ENST00000401394 USP17L22D6RA61 530 aa23.02■■□□□ 1.28
CTCF-202ENST00000401394 USP17L17D6RBQ6 530 aa23.02■■□□□ 1.28
CTCF-202ENST00000401394 USP17L19D6RCP7 530 aa23.02■■□□□ 1.28
CTCF-202ENST00000401394 USP17L20D6RJB6 530 aa23.02■■□□□ 1.28
CTCF-202ENST00000401394 SNAP25P60880 206 aa23.02■■□□□ 1.28
CTCF-202ENST00000401394 PSMC6P62333 389 aa23.02■■□□□ 1.28
CTCF-202ENST00000401394 FKBP3Q00688 224 aaKnown RBP23.02■■□□□ 1.28
CTCF-202ENST00000401394 KCNA1Q09470 495 aa23.02■■□□□ 1.28
CTCF-202ENST00000401394 USP17L24Q0WX57 530 aa23.02■■□□□ 1.28
CTCF-202ENST00000401394 USP17L6PQ6QN14 398 aa23.02■■□□□ 1.28
CTCF-202ENST00000401394 RBM46Q8TBY0 533 aaKnown RBP23.02■■□□□ 1.28
CTCF-202ENST00000401394 SPZ1Q9BXG8 430 aa23.02■■□□□ 1.28
CTCF-202ENST00000401394 TULP1O00294 542 aaPredicted RBP23.02■■□□□ 1.28
CTCF-202ENST00000401394 FBXL5Q9UKA1 691 aa23.02■■□□□ 1.28
CTCF-202ENST00000401394 PHLPP1O60346 1717 aa23.02■■□□□ 1.28
CTCF-202ENST00000401394 SSU72P8A0A1W2PR75 194 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 PHF20L1A8MW92 1017 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 LRRC63Q05C16 580 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 KCNH2Q12809 1159 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 ADAM9Q13443 819 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 PRPF38AQ8NAV1 312 aaKnown RBP23.01■■□□□ 1.27
CTCF-202ENST00000401394 MAGEF1Q9HAY2 307 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 EP400Q96L91 3159 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 SNED1Q8TER0 1413 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 PVALEFA0A1B0GWK0 134 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 F8W031 263 aaPredicted RBP23.01■■□□□ 1.27
CTCF-202ENST00000401394 SART1O43290 800 aaKnown RBP23.01■■□□□ 1.27
CTCF-202ENST00000401394 ZNF844Q08AG5 666 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 NBPF9Q3BBW0 867 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 GALNT17Q6IS24 598 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 METTL13Q8N6R0 699 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 UHMK1Q8TAS1 419 aaKnown RBP23.01■■□□□ 1.27
CTCF-202ENST00000401394 TSG101Q99816 390 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 TRIM51Q9BSJ1 452 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 CHORDC1Q9UHD1 332 aaPredicted RBP23.01■■□□□ 1.27
CTCF-202ENST00000401394 POTEFA5A3E0 1075 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 TTI1O43156 1089 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 POTEIP0CG38 1075 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 PDHBP11177 359 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 CTNNA1P35221 906 aaKnown RBP23.01■■□□□ 1.27
CTCF-202ENST00000401394 ODF2Q5BJF6 829 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 DCAF17Q5H9S7 520 aaPredicted RBP23.01■■□□□ 1.27
CTCF-202ENST00000401394 POTEGQ6S5H5 508 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 POTEEQ6S8J3 1075 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 CNPY4Q8N129 248 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 NOVA2Q9UNW9 492 aaKnown RBP23.01■■□□□ 1.27
CTCF-202ENST00000401394 PCDHGC5Q9Y5F6 944 aa23.01■■□□□ 1.27
CTCF-202ENST00000401394 SMIM23A6NLE4 172 aa23■■□□□ 1.27
CTCF-202ENST00000401394 RBAK-RBAKDNI3L0D1 243 aa23■■□□□ 1.27
CTCF-202ENST00000401394 POLD1P28340 1107 aa23■■□□□ 1.27
CTCF-202ENST00000401394 TM4SF1P30408 202 aa23■■□□□ 1.27
CTCF-202ENST00000401394 RPS6KA1Q15418 735 aa23■■□□□ 1.27
CTCF-202ENST00000401394 KCTD1Q719H9 257 aa23■■□□□ 1.27
CTCF-202ENST00000401394 TEX11Q8IYF3 940 aa23■■□□□ 1.27
CTCF-202ENST00000401394 RNF10Q8N5U6 811 aaKnown RBP23■■□□□ 1.27
CTCF-202ENST00000401394 DNM1LO00429 736 aa23■■□□□ 1.27
CTCF-202ENST00000401394 OPLAHO14841 1288 aa23■■□□□ 1.27
CTCF-202ENST00000401394 CCDC13Q8IYE1 715 aa23■■□□□ 1.27
CTCF-202ENST00000401394 CYFIP2Q96F07 1278 aa23■■□□□ 1.27
CTCF-202ENST00000401394 SFI1A8K8P3 1242 aa22.99■■□□□ 1.27
CTCF-202ENST00000401394 H0YGN5 161 aa22.99■■□□□ 1.27
CTCF-202ENST00000401394 ECM2O94769 699 aaPredicted RBP22.99■■□□□ 1.27
CTCF-202ENST00000401394 CASP4P49662 377 aa22.99■■□□□ 1.27
CTCF-202ENST00000401394 ASIC2Q16515 512 aa22.99■■□□□ 1.27
CTCF-202ENST00000401394 AADACL2Q6P093 401 aa22.99■■□□□ 1.27
CTCF-202ENST00000401394 RTFDC1Q9BY42 306 aaPredicted RBP22.99■■□□□ 1.27
CTCF-202ENST00000401394 TMBIM4Q9HC24 238 aa22.99■■□□□ 1.27
CTCF-202ENST00000401394 OSGEPQ9NPF4 335 aa22.99■■□□□ 1.27
CTCF-202ENST00000401394 DDX25Q9UHL0 483 aaKnown RBP22.99■■□□□ 1.27
CTCF-202ENST00000401394 NFS1Q9Y697 457 aa22.99■■□□□ 1.27
CTCF-202ENST00000401394 SCN7AQ01118 1682 aa22.99■■□□□ 1.27
CTCF-202ENST00000401394 ADCY7P51828 1080 aa22.99■■□□□ 1.27
CTCF-202ENST00000401394 LLGL1Q15334 1064 aa22.99■■□□□ 1.27
CTCF-202ENST00000401394 TMEM266Q2M3C6 531 aa22.99■■□□□ 1.27
CTCF-202ENST00000401394 TCERG1LQ5VWI1 586 aa22.99■■□□□ 1.27
CTCF-202ENST00000401394 SPTY2D1Q68D10 685 aaPredicted RBP22.99■■□□□ 1.27
CTCF-202ENST00000401394 GPBP1Q86WP2 473 aa22.99■■□□□ 1.27
CTCF-202ENST00000401394 TRIM59Q8IWR1 403 aa22.99■■□□□ 1.27
CTCF-202ENST00000401394 GANQ9H2C0 597 aa22.99■■□□□ 1.27
CTCF-202ENST00000401394 TAF1DQ9H5J8 278 aaPredicted RBP22.99■■□□□ 1.27
CTCF-202ENST00000401394 DDX20Q9UHI6 824 aaKnown RBP22.99■■□□□ 1.27
CTCF-202ENST00000401394 CLIC2O15247 247 aa22.98■■□□□ 1.27
CTCF-202ENST00000401394 TNFRSF8P28908 595 aa22.98■■□□□ 1.27
CTCF-202ENST00000401394 RFC4P35249 363 aa22.98■■□□□ 1.27
CTCF-202ENST00000401394 EPS15P42566 896 aa22.98■■□□□ 1.27
CTCF-202ENST00000401394 IRF2BP2Q7Z5L9 587 aa22.98■■□□□ 1.27
CTCF-202ENST00000401394 OSBPL7Q9BZF2 842 aa22.98■■□□□ 1.27
CTCF-202ENST00000401394 RTCBQ9Y3I0 505 aaKnown RBP22.98■■□□□ 1.27
CTCF-202ENST00000401394 KIF4AO95239 1232 aa22.98■■□□□ 1.27
CTCF-202ENST00000401394 FXR2P51116 673 aaKnown RBP eCLIP22.98■■□□□ 1.277e-7■■■■■ 31.5
CTCF-202ENST00000401394 KSR1Q8IVT5 923 aa22.98■■□□□ 1.27
CTCF-202ENST00000401394 SETDB2Q96T68 719 aa22.98■■□□□ 1.27
CTCF-202ENST00000401394 NOC2LQ9Y3T9 749 aaKnown RBP22.98■■□□□ 1.27
CTCF-202ENST00000401394 RSPH10B2B2RC85 870 aa22.98■■□□□ 1.27
CTCF-202ENST00000401394 RSPH10BP0C881 870 aa22.98■■□□□ 1.27
CTCF-202ENST00000401394 AKR1B1P15121 316 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms