RNA–Protein interactions for RNA: ENST00000395761.3

CXCL1-201, Transcript of C-X-C motif chemokine ligand 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CXCL1, Length 1,097 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1-201ENST00000395761 SLC5A5Q92911 643 aa18.76■□□□□ 0.59
CXCL1-201ENST00000395761 PRDM5Q9NQX1 630 aaPredicted RBP18.76■□□□□ 0.59
CXCL1-201ENST00000395761 PDLIM7Q9NR12 457 aa18.76■□□□□ 0.59
CXCL1-201ENST00000395761 FOXD4L1Q9NU39 408 aa18.76■□□□□ 0.59
CXCL1-201ENST00000395761 KIF3AQ9Y496 699 aa18.76■□□□□ 0.59
CXCL1-201ENST00000395761 SCN10AQ9Y5Y9 1956 aa18.75■□□□□ 0.59
CXCL1-201ENST00000395761 TRIM43BA6NCK2 446 aa18.75■□□□□ 0.59
CXCL1-201ENST00000395761 H3BRB1 525 aa18.75■□□□□ 0.59
CXCL1-201ENST00000395761 CD4P01730 458 aa18.75■□□□□ 0.59
CXCL1-201ENST00000395761 CLTBP09497 229 aa18.75■□□□□ 0.59
CXCL1-201ENST00000395761 PPP4R3AQ6IN85 833 aa18.75■□□□□ 0.59
CXCL1-201ENST00000395761 NFRKBQ6P4R8 1299 aa18.75■□□□□ 0.59
CXCL1-201ENST00000395761 ETNPPLQ8TBG4 499 aa18.75■□□□□ 0.59
CXCL1-201ENST00000395761 TRIM43Q96BQ3 446 aaPredicted RBP18.75■□□□□ 0.59
CXCL1-201ENST00000395761 INTS4Q96HW7 963 aaKnown RBP18.75■□□□□ 0.59
CXCL1-201ENST00000395761 PCYT2Q99447 389 aa18.75■□□□□ 0.59
CXCL1-201ENST00000395761 SEZ6LQ9BYH1 1024 aa18.75■□□□□ 0.59
CXCL1-201ENST00000395761 FOXP1Q9H334 677 aaPredicted RBP18.75■□□□□ 0.59
CXCL1-201ENST00000395761 TUT1Q9H6E5 874 aaKnown RBP18.75■□□□□ 0.59
CXCL1-201ENST00000395761 TBC1D22BQ9NU19 505 aa18.75■□□□□ 0.59
CXCL1-201ENST00000395761 TRMT13Q9NUP7 481 aaKnown RBP18.75■□□□□ 0.59
CXCL1-201ENST00000395761 MROH7Q68CQ1 1323 aa18.74■□□□□ 0.59
CXCL1-201ENST00000395761 B4GALT4O60513 344 aa18.74■□□□□ 0.59
CXCL1-201ENST00000395761 ATG7O95352 703 aa18.74■□□□□ 0.59
CXCL1-201ENST00000395761 ATP2B1P20020 1258 aa18.74■□□□□ 0.59
CXCL1-201ENST00000395761 ITGB8P26012 769 aa18.74■□□□□ 0.59
CXCL1-201ENST00000395761 LARP1BQ659C4 914 aaKnown RBP18.74■□□□□ 0.59
CXCL1-201ENST00000395761 KATNAL1Q9BW62 490 aa18.74■□□□□ 0.59
CXCL1-201ENST00000395761 TMEM39AQ9NV64 488 aa18.74■□□□□ 0.59
CXCL1-201ENST00000395761 HDAC6Q9UBN7 1215 aa18.74■□□□□ 0.59
CXCL1-201ENST00000395761 GCFC2P16383 781 aaKnown RBP18.73■□□□□ 0.59
CXCL1-201ENST00000395761 U2AF2P26368 475 aaKnown RBP eCLIP18.73■□□□□ 0.59
CXCL1-201ENST00000395761 GNL2Q13823 731 aaKnown RBP18.73■□□□□ 0.59
CXCL1-201ENST00000395761 HIC1Q14526 733 aa18.73■□□□□ 0.59
CXCL1-201ENST00000395761 LRCH2Q5VUJ6 765 aa18.73■□□□□ 0.59
CXCL1-201ENST00000395761 ABHD15Q6UXT9 468 aa18.73■□□□□ 0.59
CXCL1-201ENST00000395761 NOSTRINQ8IVI9 506 aa18.73■□□□□ 0.59
CXCL1-201ENST00000395761 C7orf31Q8N865 590 aa18.73■□□□□ 0.59
CXCL1-201ENST00000395761 RIT2Q99578 217 aa18.73■□□□□ 0.59
CXCL1-201ENST00000395761 RNPEPQ9H4A4 650 aa18.73■□□□□ 0.59
CXCL1-201ENST00000395761 KCNMB3Q9NPA1 279 aa18.73■□□□□ 0.59
CXCL1-201ENST00000395761 TBX21Q9UL17 535 aa18.73■□□□□ 0.59
CXCL1-201ENST00000395761 CEP290O15078 2479 aa18.73■□□□□ 0.59
CXCL1-201ENST00000395761 KIAA0355O15063 1070 aa18.72■□□□□ 0.59
CXCL1-201ENST00000395761 TLR3O15455 904 aaKnown RBP18.72■□□□□ 0.59
CXCL1-201ENST00000395761 GAS7O60861 476 aa18.72■□□□□ 0.59
CXCL1-201ENST00000395761 LGR5O75473 907 aa18.72■□□□□ 0.59
CXCL1-201ENST00000395761 PSMD10O75832 226 aa18.72■□□□□ 0.59
CXCL1-201ENST00000395761 ZNF200P98182 395 aaPredicted RBP18.72■□□□□ 0.59
CXCL1-201ENST00000395761 PTPN11Q06124 597 aaPredicted RBP18.72■□□□□ 0.59
CXCL1-201ENST00000395761 GDF6Q6KF10 455 aaPredicted RBP18.72■□□□□ 0.59
CXCL1-201ENST00000395761 ZNF746Q6NUN9 644 aaPredicted RBP18.72■□□□□ 0.59
CXCL1-201ENST00000395761 SESTD1Q86VW0 696 aa18.72■□□□□ 0.59
CXCL1-201ENST00000395761 HAS1Q92839 578 aa18.72■□□□□ 0.59
CXCL1-201ENST00000395761 GLG1Q92896 1179 aa18.72■□□□□ 0.59
CXCL1-201ENST00000395761 NAP1L4Q99733 375 aaKnown RBP18.72■□□□□ 0.59
CXCL1-201ENST00000395761 PRKAG2Q9UGJ0 569 aa18.72■□□□□ 0.59
CXCL1-201ENST00000395761 GTF2IRD1Q9UHL9 959 aa18.72■□□□□ 0.59
CXCL1-201ENST00000395761 IGKV6D-21A0A0A0MT36 114 aa18.71■□□□□ 0.59
CXCL1-201ENST00000395761 H3BQV1 296 aa18.71■□□□□ 0.59
CXCL1-201ENST00000395761 SUPT20HL2P0C7V6 817 aa18.71■□□□□ 0.59
CXCL1-201ENST00000395761 SMIM10L2AP0DMW4 78 aa18.71■□□□□ 0.59
CXCL1-201ENST00000395761 SMIM10L2BP0DMW5 78 aa18.71■□□□□ 0.59
CXCL1-201ENST00000395761 CYP2C9P11712 490 aa18.71■□□□□ 0.59
CXCL1-201ENST00000395761 MARK3P27448 753 aa18.71■□□□□ 0.59
CXCL1-201ENST00000395761 KRT76Q01546 638 aa18.71■□□□□ 0.59
CXCL1-201ENST00000395761 PRPF38BQ5VTL8 546 aaKnown RBP18.71■□□□□ 0.59
CXCL1-201ENST00000395761 MCTP1Q6DN14 999 aa18.71■□□□□ 0.59
CXCL1-201ENST00000395761 CTAGE1Q96RT6 745 aa18.71■□□□□ 0.59
CXCL1-201ENST00000395761 UNC45AQ9H3U1 944 aa18.71■□□□□ 0.59
CXCL1-201ENST00000395761 SMARCAD1Q9H4L7 1026 aa18.71■□□□□ 0.59
CXCL1-201ENST00000395761 ZNF215Q9UL58 517 aaPredicted RBP18.71■□□□□ 0.59
CXCL1-201ENST00000395761 EMSYQ7Z589 1322 aa18.71■□□□□ 0.59
CXCL1-201ENST00000395761 CHMP2AO43633 222 aa18.7■□□□□ 0.58
CXCL1-201ENST00000395761 TOB1P50616 345 aaPredicted RBP18.7■□□□□ 0.58
CXCL1-201ENST00000395761 STAT5BP51692 787 aa18.7■□□□□ 0.58
CXCL1-201ENST00000395761 MDM2Q00987 491 aaPredicted RBP18.7■□□□□ 0.58
CXCL1-201ENST00000395761 SWSAP1Q6NVH7 229 aa18.7■□□□□ 0.58
CXCL1-201ENST00000395761 MIS18BP1Q6P0N0 1132 aa18.7■□□□□ 0.58
CXCL1-201ENST00000395761 CCDC60Q8IWA6 550 aaPredicted RBP18.7■□□□□ 0.58
CXCL1-201ENST00000395761 TEKT3Q9BXF9 490 aa18.7■□□□□ 0.58
CXCL1-201ENST00000395761 AZI2Q9H6S1 392 aa18.7■□□□□ 0.58
CXCL1-201ENST00000395761 ERAP1Q9NZ08 941 aa18.7■□□□□ 0.58
CXCL1-201ENST00000395761 BACH1O14867 736 aa18.69■□□□□ 0.58
CXCL1-201ENST00000395761 MCM7P33993 719 aa18.69■□□□□ 0.58
CXCL1-201ENST00000395761 MAGEA10P43363 369 aaPredicted RBP18.69■□□□□ 0.58
CXCL1-201ENST00000395761 NBR1Q14596 966 aa18.69■□□□□ 0.58
CXCL1-201ENST00000395761 ZNF174Q15697 407 aa18.69■□□□□ 0.58
CXCL1-201ENST00000395761 PTGISQ16647 500 aa18.69■□□□□ 0.58
CXCL1-201ENST00000395761 B3GNT9Q6UX72 402 aa18.69■□□□□ 0.58
CXCL1-201ENST00000395761 PLPPR4Q7Z2D5 763 aa18.69■□□□□ 0.58
CXCL1-201ENST00000395761 SMAP1Q8IYB5 467 aaPredicted RBP18.69■□□□□ 0.58
CXCL1-201ENST00000395761 BADQ92934 168 aa18.69■□□□□ 0.58
CXCL1-201ENST00000395761 FAM20AQ96MK3 541 aa18.69■□□□□ 0.58
CXCL1-201ENST00000395761 DISC1Q9NRI5 854 aa18.69■□□□□ 0.58
CXCL1-201ENST00000395761 SETD4Q9NVD3 440 aa18.69■□□□□ 0.58
CXCL1-201ENST00000395761 VAV3Q9UKW4 847 aa18.69■□□□□ 0.58
CXCL1-201ENST00000395761 SAMM50Q9Y512 469 aa18.69■□□□□ 0.58
CXCL1-201ENST00000395761 PCDHA10Q9Y5I2 948 aa18.69■□□□□ 0.58
CXCL1-201ENST00000395761 TBX3O15119 743 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms