RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 HSPA2P54652 639 aa15.5■□□□□ 0.07
RTF1-201ENST00000389629 DR1Q01658 176 aa15.5■□□□□ 0.07
RTF1-201ENST00000389629 STK4Q13043 487 aa15.5■□□□□ 0.07
RTF1-201ENST00000389629 DDX42Q86XP3 938 aaKnown RBP eCLIP15.5■□□□□ 0.07
RTF1-201ENST00000389629 AMACRQ9UHK6 382 aa15.5■□□□□ 0.07
RTF1-201ENST00000389629 DIP2BQ9P265 1576 aa15.5■□□□□ 0.07
RTF1-201ENST00000389629 PNPLA7Q6ZV29 1317 aa15.5■□□□□ 0.07
RTF1-201ENST00000389629 PLEKP08567 350 aaPredicted RBP15.5■□□□□ 0.07
RTF1-201ENST00000389629 CRKLP46109 303 aaKnown RBP15.5■□□□□ 0.07
RTF1-201ENST00000389629 KCNB1Q14721 858 aa15.5■□□□□ 0.07
RTF1-201ENST00000389629 EP400NLQ6ZTU2 488 aa15.5■□□□□ 0.07
RTF1-201ENST00000389629 SCYL3Q8IZE3 742 aa15.5■□□□□ 0.07
RTF1-201ENST00000389629 GFPT2O94808 682 aa15.5■□□□□ 0.07
RTF1-201ENST00000389629 CASP7P55210 303 aa15.5■□□□□ 0.07
RTF1-201ENST00000389629 CYP4A11Q02928 519 aa15.5■□□□□ 0.07
RTF1-201ENST00000389629 SNX1Q13596 522 aa15.5■□□□□ 0.07
RTF1-201ENST00000389629 PRR16Q569H4 304 aa15.5■□□□□ 0.07
RTF1-201ENST00000389629 FAM83BQ5T0W9 1011 aa15.5■□□□□ 0.07
RTF1-201ENST00000389629 FAM47EQ6ZV65 393 aa15.5■□□□□ 0.07
RTF1-201ENST00000389629 UNC13DQ70J99 1090 aa15.5■□□□□ 0.07
RTF1-201ENST00000389629 STAG2Q8N3U4 1231 aa15.5■□□□□ 0.07
RTF1-201ENST00000389629 SEC16BQ96JE7 1060 aa15.5■□□□□ 0.07
RTF1-201ENST00000389629 TMOD2Q9NZR1 351 aa15.5■□□□□ 0.07
RTF1-201ENST00000389629 PABPC4Q13310 644 aaKnown RBP eCLIP15.49■□□□□ 0.07
RTF1-201ENST00000389629 MYO5BQ9ULV0 1848 aa15.49■□□□□ 0.07
RTF1-201ENST00000389629 OPHN1O60890 802 aa15.49■□□□□ 0.07
RTF1-201ENST00000389629 AZI2Q9H6S1 392 aa15.49■□□□□ 0.07
RTF1-201ENST00000389629 SH2D4AQ9H788 454 aa15.49■□□□□ 0.07
RTF1-201ENST00000389629 BZW2Q9Y6E2 419 aaKnown RBP15.49■□□□□ 0.07
RTF1-201ENST00000389629 SLIT1O75093 1534 aa15.49■□□□□ 0.07
RTF1-201ENST00000389629 POC1B-GALNT4F8VUJ3 575 aa15.49■□□□□ 0.07
RTF1-201ENST00000389629 GNPATO15228 680 aa15.49■□□□□ 0.07
RTF1-201ENST00000389629 FAM107AO95990 144 aa15.49■□□□□ 0.07
RTF1-201ENST00000389629 PRDX5P30044 214 aa15.49■□□□□ 0.07
RTF1-201ENST00000389629 EIF3BP55884 814 aaKnown RBP15.49■□□□□ 0.07
RTF1-201ENST00000389629 CYB5D1Q6P9G0 228 aa15.49■□□□□ 0.07
RTF1-201ENST00000389629 TRIM9Q9C026 710 aa15.49■□□□□ 0.07
RTF1-201ENST00000389629 ERVV-1B6SEH8 477 aa15.49■□□□□ 0.07
RTF1-201ENST00000389629 MDM2Q00987 491 aaPredicted RBP15.49■□□□□ 0.07
RTF1-201ENST00000389629 CYP4F22Q6NT55 531 aa15.49■□□□□ 0.07
RTF1-201ENST00000389629 MYCBPAPQ8TBZ2 947 aa15.49■□□□□ 0.07
RTF1-201ENST00000389629 MIPOL1Q8TD10 442 aa15.49■□□□□ 0.07
RTF1-201ENST00000389629 EMILIN3Q9NT22 766 aa15.49■□□□□ 0.07
RTF1-201ENST00000389629 A0A087X0B3 334 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 SKAP2O75563 359 aaPredicted RBP15.48■□□□□ 0.07
RTF1-201ENST00000389629 IFNB1P01574 187 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 GCFC2P16383 781 aaKnown RBP15.48■□□□□ 0.07
RTF1-201ENST00000389629 DIXDC1Q155Q3 683 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 DCP1AQ9NPI6 582 aaPredicted RBP15.48■□□□□ 0.07
RTF1-201ENST00000389629 SH3GLB2Q9NR46 395 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 HDAC9Q9UKV0 1011 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 EVI5O60447 810 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 TROVE2P10155 538 aaKnown RBP eCLIP15.48■□□□□ 0.07
RTF1-201ENST00000389629 HERVK_113P62684 666 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 DGKHQ86XP1 1220 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 CCHCR1Q8TD31 782 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 HDAC7Q8WUI4 952 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 FAM217BQ9NTX9 383 aaPredicted RBP15.48■□□□□ 0.07
RTF1-201ENST00000389629 INTUQ9ULD6 942 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 CLIC2O15247 247 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 AFPP02771 609 aaKnown RBP15.48■□□□□ 0.07
RTF1-201ENST00000389629 TRIP13Q15645 432 aaPredicted RBP15.48■□□□□ 0.07
RTF1-201ENST00000389629 ERFEQ4G0M1 354 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 NT5DC1Q5TFE4 455 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 TPH2Q8IWU9 490 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 DDX23Q9BUQ8 820 aaKnown RBP15.48■□□□□ 0.07
RTF1-201ENST00000389629 PLA2G12BQ9BX93 195 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 CEP72Q9P209 647 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 LRRN2O75325 713 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 BTDP43251 543 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 SLC44A5Q8NCS7 719 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 CFAP61Q8NHU2 1237 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 LRRC8CQ8TDW0 803 aa15.48■□□□□ 0.07
RTF1-201ENST00000389629 PASKQ96RG2 1323 aa15.47■□□□□ 0.07
RTF1-201ENST00000389629 PDHBP11177 359 aa15.47■□□□□ 0.07
RTF1-201ENST00000389629 PDE6CP51160 858 aa15.47■□□□□ 0.07
RTF1-201ENST00000389629 UBE2SQ16763 222 aa15.47■□□□□ 0.07
RTF1-201ENST00000389629 DPP8Q6V1X1 898 aaPredicted RBP15.47■□□□□ 0.07
RTF1-201ENST00000389629 APBB1IPQ7Z5R6 666 aaPredicted RBP15.47■□□□□ 0.07
RTF1-201ENST00000389629 TMEM139Q8IV31 216 aa15.47■□□□□ 0.07
RTF1-201ENST00000389629 TAB3Q8N5C8 712 aaPredicted RBP15.47■□□□□ 0.07
RTF1-201ENST00000389629 RUNDC3BQ96NL0 473 aa15.47■□□□□ 0.07
RTF1-201ENST00000389629 PDS5AQ29RF7 1337 aaKnown RBP15.47■□□□□ 0.07
RTF1-201ENST00000389629 TMEM94Q12767 1356 aa15.47■□□□□ 0.07
RTF1-201ENST00000389629 RHOBTB3O94955 611 aa15.47■□□□□ 0.07
RTF1-201ENST00000389629 TRIM37O94972 964 aa15.47■□□□□ 0.07
RTF1-201ENST00000389629 EARS2Q5JPH6 523 aaKnown RBP15.47■□□□□ 0.07
RTF1-201ENST00000389629 SGSM3Q96HU1 749 aa15.47■□□□□ 0.07
RTF1-201ENST00000389629 BCRP11274 1271 aa15.47■□□□□ 0.07
RTF1-201ENST00000389629 ZNF211Q13398 564 aaPredicted RBP15.47■□□□□ 0.07
RTF1-201ENST00000389629 PHLDB3Q6NSJ2 640 aa15.47■□□□□ 0.07
RTF1-201ENST00000389629 SUGP1Q8IWZ8 645 aaKnown RBP15.47■□□□□ 0.07
RTF1-201ENST00000389629 TMEM60Q9H2L4 133 aa15.47■□□□□ 0.07
RTF1-201ENST00000389629 RTCBQ9Y3I0 505 aaKnown RBP15.47■□□□□ 0.07
RTF1-201ENST00000389629 ZNF804BA4D1E1 1349 aa15.47■□□□□ 0.07
RTF1-201ENST00000389629 MEIS1O00470 390 aa15.46■□□□□ 0.07
RTF1-201ENST00000389629 IL9RQ01113 521 aa15.46■□□□□ 0.07
RTF1-201ENST00000389629 SEPT14Q6ZU15 432 aa15.46■□□□□ 0.07
RTF1-201ENST00000389629 ARHGAP24Q8N264 748 aa15.46■□□□□ 0.07
RTF1-201ENST00000389629 LBHD1Q9BQE6 289 aaPredicted RBP15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms