RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 ANKS1AQ92625 1134 aa20.27■□□□□ 0.84
CCDC3-201ENST00000378825 C6orf50Q9HD87 102 aa20.27■□□□□ 0.84
CCDC3-201ENST00000378825 COL5A3P25940 1745 aaPredicted RBP20.27■□□□□ 0.84
CCDC3-201ENST00000378825 CEP104O60308 925 aa20.27■□□□□ 0.84
CCDC3-201ENST00000378825 ZNF844Q08AG5 666 aa20.27■□□□□ 0.84
CCDC3-201ENST00000378825 KLHL30Q0D2K2 578 aa20.27■□□□□ 0.84
CCDC3-201ENST00000378825 COASYQ13057 564 aa20.27■□□□□ 0.84
CCDC3-201ENST00000378825 ZCWPW2Q504Y3 356 aa20.27■□□□□ 0.84
CCDC3-201ENST00000378825 ZKSCAN4Q969J2 545 aaPredicted RBP20.27■□□□□ 0.84
CCDC3-201ENST00000378825 IQCDQ96DY2 449 aa20.27■□□□□ 0.84
CCDC3-201ENST00000378825 OSBPL7Q9BZF2 842 aa20.27■□□□□ 0.84
CCDC3-201ENST00000378825 ANKRD2Q9GZV1 360 aa20.27■□□□□ 0.84
CCDC3-201ENST00000378825 TAF1DQ9H5J8 278 aaPredicted RBP20.27■□□□□ 0.84
CCDC3-201ENST00000378825 RTCBQ9Y3I0 505 aaKnown RBP20.27■□□□□ 0.84
CCDC3-201ENST00000378825 PVALEFA0A1B0GWK0 134 aa20.26■□□□□ 0.83
CCDC3-201ENST00000378825 DNM1LO00429 736 aa20.26■□□□□ 0.83
CCDC3-201ENST00000378825 PPP1R2P41236 205 aa20.26■□□□□ 0.83
CCDC3-201ENST00000378825 C6orf89Q6UWU4 347 aa20.26■□□□□ 0.83
CCDC3-201ENST00000378825 MYOCDQ8IZQ8 938 aa20.26■□□□□ 0.83
CCDC3-201ENST00000378825 DNAJC19Q96DA6 116 aa20.26■□□□□ 0.83
CCDC3-201ENST00000378825 VCPKMTQ9H867 229 aa20.26■□□□□ 0.83
CCDC3-201ENST00000378825 DDX20Q9UHI6 824 aaKnown RBP20.26■□□□□ 0.83
CCDC3-201ENST00000378825 MYBP10242 640 aa20.26■□□□□ 0.83
CCDC3-201ENST00000378825 WHAMMQ8TF30 809 aa20.26■□□□□ 0.83
CCDC3-201ENST00000378825 TSKSQ9UJT2 592 aa20.26■□□□□ 0.83
CCDC3-201ENST00000378825 USP17L5A8MUK1 530 aa20.26■□□□□ 0.83
CCDC3-201ENST00000378825 HMGB1P1B2RPK0 211 aaPredicted RBP20.26■□□□□ 0.83
CCDC3-201ENST00000378825 PTK2Q05397 1052 aa20.26■□□□□ 0.83
CCDC3-201ENST00000378825 SOGA3Q5TF21 947 aa20.26■□□□□ 0.83
CCDC3-201ENST00000378825 CLEC10AQ8IUN9 316 aa20.26■□□□□ 0.83
CCDC3-201ENST00000378825 SLC40A1Q9NP59 571 aa20.26■□□□□ 0.83
CCDC3-201ENST00000378825 KLC4Q9NSK0 619 aa20.26■□□□□ 0.83
CCDC3-201ENST00000378825 SLC12A6Q9UHW9 1150 aa20.26■□□□□ 0.83
CCDC3-201ENST00000378825 TMEM59LQ9UK28 342 aa20.26■□□□□ 0.83
CCDC3-201ENST00000378825 FBXL5Q9UKA1 691 aa20.26■□□□□ 0.83
CCDC3-201ENST00000378825 PDHBP11177 359 aa20.25■□□□□ 0.83
CCDC3-201ENST00000378825 CTNNA1P35221 906 aaKnown RBP20.25■□□□□ 0.83
CCDC3-201ENST00000378825 UBE2SQ16763 222 aa20.25■□□□□ 0.83
CCDC3-201ENST00000378825 EMC10Q5UCC4 262 aa20.25■□□□□ 0.83
CCDC3-201ENST00000378825 CELF4Q9BZC1 486 aaKnown RBP20.25■□□□□ 0.83
CCDC3-201ENST00000378825 AMACRQ9UHK6 382 aa20.25■□□□□ 0.83
CCDC3-201ENST00000378825 CCDC88AQ3V6T2 1871 aa20.25■□□□□ 0.83
CCDC3-201ENST00000378825 ATXN2Q99700 1313 aaKnown RBP20.25■□□□□ 0.83
CCDC3-201ENST00000378825 FKBP3Q00688 224 aaKnown RBP20.25■□□□□ 0.83
CCDC3-201ENST00000378825 ZNF571Q7Z3V5 609 aaPredicted RBP20.25■□□□□ 0.83
CCDC3-201ENST00000378825 UBLCP1Q8WVY7 318 aaPredicted RBP20.25■□□□□ 0.83
CCDC3-201ENST00000378825 RNF14Q9UBS8 474 aa20.25■□□□□ 0.83
CCDC3-201ENST00000378825 GCOM1H8Y6P7 765 aaPredicted RBP20.24■□□□□ 0.83
CCDC3-201ENST00000378825 SART1O43290 800 aaKnown RBP20.24■□□□□ 0.83
CCDC3-201ENST00000378825 DAPK3O43293 454 aa20.24■□□□□ 0.83
CCDC3-201ENST00000378825 MYZAPP0CAP1 466 aa20.24■□□□□ 0.83
CCDC3-201ENST00000378825 SLC9A1P19634 815 aa20.24■□□□□ 0.83
CCDC3-201ENST00000378825 GNA11P29992 359 aa20.24■□□□□ 0.83
CCDC3-201ENST00000378825 RPS6KA1Q15418 735 aa20.24■□□□□ 0.83
CCDC3-201ENST00000378825 TSG101Q99816 390 aa20.24■□□□□ 0.83
CCDC3-201ENST00000378825 ISCUQ9H1K1 167 aa20.24■□□□□ 0.83
CCDC3-201ENST00000378825 PLCB1Q9NQ66 1216 aa20.24■□□□□ 0.83
CCDC3-201ENST00000378825 E9PMD0 336 aa20.24■□□□□ 0.83
CCDC3-201ENST00000378825 RASSF9O75901 435 aa20.24■□□□□ 0.83
CCDC3-201ENST00000378825 USP8P40818 1118 aa20.24■□□□□ 0.83
CCDC3-201ENST00000378825 BYSLQ13895 437 aaKnown RBP20.24■□□□□ 0.83
CCDC3-201ENST00000378825 MDM1Q8TC05 714 aa20.24■□□□□ 0.83
CCDC3-201ENST00000378825 PAGR1Q9BTK6 254 aa20.24■□□□□ 0.83
CCDC3-201ENST00000378825 SPZ1Q9BXG8 430 aa20.24■□□□□ 0.83
CCDC3-201ENST00000378825 STK17AQ9UEE5 414 aa20.24■□□□□ 0.83
CCDC3-201ENST00000378825 NOVA2Q9UNW9 492 aaKnown RBP20.24■□□□□ 0.83
CCDC3-201ENST00000378825 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.24■□□□□ 0.83
CCDC3-201ENST00000378825 A6NNZ2 444 aa20.23■□□□□ 0.83
CCDC3-201ENST00000378825 PHF20L1A8MW92 1017 aa20.23■□□□□ 0.83
CCDC3-201ENST00000378825 OPLAHO14841 1288 aa20.23■□□□□ 0.83
CCDC3-201ENST00000378825 KIF4AO95239 1232 aa20.23■□□□□ 0.83
CCDC3-201ENST00000378825 FGFR1OPO95684 399 aaKnown RBP20.23■□□□□ 0.83
CCDC3-201ENST00000378825 LDHBP07195 334 aaKnown RBP20.23■□□□□ 0.83
CCDC3-201ENST00000378825 TNNI2P48788 182 aa20.23■□□□□ 0.83
CCDC3-201ENST00000378825 EIF6P56537 245 aaKnown RBP20.23■□□□□ 0.83
CCDC3-201ENST00000378825 TNNC1P63316 161 aa20.23■□□□□ 0.83
CCDC3-201ENST00000378825 TUBB8Q3ZCM7 444 aa20.23■□□□□ 0.83
CCDC3-201ENST00000378825 CEP95Q96GE4 821 aa20.23■□□□□ 0.83
CCDC3-201ENST00000378825 TRIM31Q9BZY9 425 aa20.23■□□□□ 0.83
CCDC3-201ENST00000378825 PANK4Q9NVE7 773 aa20.23■□□□□ 0.83
CCDC3-201ENST00000378825 HAUS2Q9NVX0 235 aa20.23■□□□□ 0.83
CCDC3-201ENST00000378825 SEC63Q9UGP8 760 aaKnown RBP20.23■□□□□ 0.83
CCDC3-201ENST00000378825 ABCB11O95342 1321 aa20.23■□□□□ 0.83
CCDC3-201ENST00000378825 ODF2Q5BJF6 829 aa20.23■□□□□ 0.83
CCDC3-201ENST00000378825 FAM26FQ5R3K3 315 aa20.23■□□□□ 0.83
CCDC3-201ENST00000378825 MICALCLQ6ZW33 695 aa20.23■□□□□ 0.83
CCDC3-201ENST00000378825 YTHDF3Q7Z739 585 aaKnown RBP20.23■□□□□ 0.83
CCDC3-201ENST00000378825 TRIM59Q8IWR1 403 aa20.23■□□□□ 0.83
CCDC3-201ENST00000378825 METTL13Q8N6R0 699 aa20.23■□□□□ 0.83
CCDC3-201ENST00000378825 EYA3Q99504 573 aa20.23■□□□□ 0.83
CCDC3-201ENST00000378825 GANQ9H2C0 597 aa20.23■□□□□ 0.83
CCDC3-201ENST00000378825 LEMD3Q9Y2U8 911 aa20.23■□□□□ 0.83
CCDC3-201ENST00000378825 GOLGA6L10A6NI86 522 aa20.22■□□□□ 0.83
CCDC3-201ENST00000378825 FAM228AQ86W67 206 aa20.22■□□□□ 0.83
CCDC3-201ENST00000378825 TAF4BQ92750 862 aa20.22■□□□□ 0.83
CCDC3-201ENST00000378825 DPH5Q9H2P9 285 aa20.22■□□□□ 0.83
CCDC3-201ENST00000378825 ZHX3Q9H4I2 956 aa20.22■□□□□ 0.83
CCDC3-201ENST00000378825 AJAP1Q9UKB5 411 aaPredicted RBP20.22■□□□□ 0.83
CCDC3-201ENST00000378825 NR2E1Q9Y466 385 aa20.22■□□□□ 0.83
CCDC3-201ENST00000378825 GMNCA6NCL1 334 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms