RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 PP2D1A8MPX8 630 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 RNF40O75150 1001 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 AFPP02771 609 aaKnown RBP16.34■□□□□ 0.21
NPHP4-201ENST00000378156 SNAP25P60880 206 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 E4F1Q66K89 784 aaPredicted RBP16.34■□□□□ 0.21
NPHP4-201ENST00000378156 KCTD16Q68DU8 428 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 SMIM5Q71RC9 77 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 ARMC9Q7Z3E5 817 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 PARVGQ9HBI0 331 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 HGSO14964 777 aaPredicted RBP16.34■□□□□ 0.21
NPHP4-201ENST00000378156 CLIC2O15247 247 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 PTK2Q05397 1052 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 TTC19Q6DKK2 380 aaPredicted RBP16.34■□□□□ 0.21
NPHP4-201ENST00000378156 CCDC170Q8IYT3 715 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 SMC1BQ8NDV3 1235 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 CCND2P30279 289 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 BPIFB4P59827 614 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 MRPS9P82933 396 aaKnown RBP16.34■□□□□ 0.21
NPHP4-201ENST00000378156 FRMPD1Q5SYB0 1578 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 MIS18BP1Q6P0N0 1132 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 TMEM206Q9H813 350 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 HESX1Q9UBX0 185 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 INO80B-WBP1J3KQ70 363 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 CAMTA2O94983 1202 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 CEP120Q8N960 986 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 CAPS2Q9BXY5 557 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 INO80BQ9C086 356 aaPredicted RBP16.34■□□□□ 0.21
NPHP4-201ENST00000378156 CAPN7Q9Y6W3 813 aa16.34■□□□□ 0.21
NPHP4-201ENST00000378156 SPATA31A1Q5TZJ5 1347 aa16.33■□□□□ 0.21
NPHP4-201ENST00000378156 POLR2BP30876 1174 aaKnown RBP16.33■□□□□ 0.21
NPHP4-201ENST00000378156 HOXA7P31268 230 aaPredicted RBP16.33■□□□□ 0.21
NPHP4-201ENST00000378156 IREB2P48200 963 aaKnown RBP16.33■□□□□ 0.21
NPHP4-201ENST00000378156 BHMT2Q9H2M3 363 aa16.33■□□□□ 0.21
NPHP4-201ENST00000378156 PARP2Q9UGN5 583 aa16.33■□□□□ 0.21
NPHP4-201ENST00000378156 DEPDC5O75140 1603 aa16.33■□□□□ 0.21
NPHP4-201ENST00000378156 FTCDO95954 541 aa16.33■□□□□ 0.2
NPHP4-201ENST00000378156 ZNF131P52739 623 aa16.33■□□□□ 0.2
NPHP4-201ENST00000378156 KIF22Q14807 665 aa16.33■□□□□ 0.2
NPHP4-201ENST00000378156 TBC1D10BQ4KMP7 808 aaPredicted RBP16.33■□□□□ 0.2
NPHP4-201ENST00000378156 CCDC125Q86Z20 511 aa16.33■□□□□ 0.2
NPHP4-201ENST00000378156 VPS52Q8N1B4 723 aa16.33■□□□□ 0.2
NPHP4-201ENST00000378156 NACA2Q9H009 215 aa16.33■□□□□ 0.2
NPHP4-201ENST00000378156 IFNB1P01574 187 aa16.33■□□□□ 0.2
NPHP4-201ENST00000378156 MFAP3P55082 362 aa16.33■□□□□ 0.2
NPHP4-201ENST00000378156 MTF1Q14872 753 aa16.33■□□□□ 0.2
NPHP4-201ENST00000378156 HHATQ5VTY9 493 aa16.33■□□□□ 0.2
NPHP4-201ENST00000378156 FAM133AQ8N9E0 248 aa16.33■□□□□ 0.2
NPHP4-201ENST00000378156 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.33■□□□□ 0.2
NPHP4-201ENST00000378156 ORC4O43929 436 aa16.33■□□□□ 0.2
NPHP4-201ENST00000378156 NSFP46459 744 aaKnown RBP16.33■□□□□ 0.2
NPHP4-201ENST00000378156 KIF11P52732 1056 aa16.33■□□□□ 0.2
NPHP4-201ENST00000378156 IRX5P78411 483 aaPredicted RBP16.33■□□□□ 0.2
NPHP4-201ENST00000378156 SDCCAG8Q86SQ7 713 aaPredicted RBP16.33■□□□□ 0.2
NPHP4-201ENST00000378156 CCDC89Q8N998 374 aa16.33■□□□□ 0.2
NPHP4-201ENST00000378156 ADGRG1Q9Y653 693 aa16.33■□□□□ 0.2
NPHP4-201ENST00000378156 ATF7P17544 494 aaPredicted RBP16.32■□□□□ 0.2
NPHP4-201ENST00000378156 APBA1Q02410 837 aa16.32■□□□□ 0.2
NPHP4-201ENST00000378156 LGALS16A8MUM7 142 aa16.32■□□□□ 0.2
NPHP4-201ENST00000378156 VGLL3A8MV65 326 aa16.32■□□□□ 0.2
NPHP4-201ENST00000378156 GYS2P54840 703 aa16.32■□□□□ 0.2
NPHP4-201ENST00000378156 FMR1Q06787 632 aaKnown RBP eCLIP16.32■□□□□ 0.22e-17■■■■■ 60.8
NPHP4-201ENST00000378156 CASP8Q14790 479 aa16.32■□□□□ 0.2
NPHP4-201ENST00000378156 USP49Q70CQ1 688 aa16.32■□□□□ 0.2
NPHP4-201ENST00000378156 NEDD1Q8NHV4 660 aa16.32■□□□□ 0.2
NPHP4-201ENST00000378156 MICAL1Q8TDZ2 1067 aa16.32■□□□□ 0.2
NPHP4-201ENST00000378156 NSUN4Q96CB9 384 aaKnown RBP16.32■□□□□ 0.2
NPHP4-201ENST00000378156 MIS12Q9H081 205 aa16.32■□□□□ 0.2
NPHP4-201ENST00000378156 JRKLQ9Y4A0 524 aa16.32■□□□□ 0.2
NPHP4-201ENST00000378156 MRPS25P82663 173 aaKnown RBP16.32■□□□□ 0.2
NPHP4-201ENST00000378156 HADHQ16836 314 aaKnown RBP16.32■□□□□ 0.2
NPHP4-201ENST00000378156 ENGASEQ8NFI3 743 aa16.32■□□□□ 0.2
NPHP4-201ENST00000378156 ARHGEF28Q8N1W1 1705 aaKnown RBP16.32■□□□□ 0.2
NPHP4-201ENST00000378156 HIP1RO75146 1068 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 GRM4Q14833 912 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 TERF2Q15554 542 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 DENND2CQ68D51 928 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 EEPD1Q7L9B9 569 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 EPB41L5Q9HCM4 733 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 PCDHA13Q9Y5I0 950 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 POTEMA6NI47 508 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 SRGAP2O75044 1071 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 HEXIM1O94992 359 aaKnown RBP16.31■□□□□ 0.2
NPHP4-201ENST00000378156 LMNB1P20700 586 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 PIK3CAP42336 1068 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 RCSD1Q6JBY9 416 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 PHLDB3Q6NSJ2 640 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 WDR24Q96S15 920 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 EPB41L4AQ9HCS5 686 aaPredicted RBP16.31■□□□□ 0.2
NPHP4-201ENST00000378156 RAB20Q9NX57 234 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 PCDHA6Q9UN73 950 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 HPS5Q9UPZ3 1129 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 PCDHA8Q9Y5H6 950 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 USP17L15C9J2P7 530 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 USP17L13C9JLJ4 530 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 USP17L11C9JVI0 530 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 USP17L18D6R9N7 530 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 USP17L22D6RA61 530 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 USP17L17D6RBQ6 530 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 USP17L19D6RCP7 530 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 USP17L20D6RJB6 530 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms