RNA–Protein interactions for RNA: ENST00000368533.7

TPM3-212, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 3,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-212ENST00000368533 N4BP1O75113 896 aaKnown RBP11.82□□□□□ -0.52
TPM3-212ENST00000368533 TUBB4AP04350 444 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 TPM1P09493 284 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 ZNF18P17022 549 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 BRD2P25440 801 aaKnown RBP11.82□□□□□ -0.52
TPM3-212ENST00000368533 PRCPP42785 496 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 PMS1P54277 932 aaKnown RBP11.82□□□□□ -0.52
TPM3-212ENST00000368533 PDE4DQ08499 809 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 PABPC4Q13310 644 aaKnown RBP eCLIP11.82□□□□□ -0.522e-26■■■□□ 15.7
TPM3-212ENST00000368533 SPATA1Q5VX52 437 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 PPP4R3AQ6IN85 833 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 TRIM65Q6PJ69 517 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 GOLGA6L1Q8N7Z2 621 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.82□□□□□ -0.52
TPM3-212ENST00000368533 PIGOQ8TEQ8 1089 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 WDR11Q9BZH6 1224 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 CCSER1Q9C0I3 900 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 VPS16Q9H269 839 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 CSADQ9Y600 493 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 MYMKA6NI61 221 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 EIF3CLB5ME19 914 aaKnown RBP11.82□□□□□ -0.52
TPM3-212ENST00000368533 VWA5AO00534 786 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 N4BP3O15049 544 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 PPP1R12BO60237 982 aaPredicted RBP11.82□□□□□ -0.52
TPM3-212ENST00000368533 STX10O60499 249 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 ICAM1P05362 532 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 ERCC5P28715 1186 aaPredicted RBP11.82□□□□□ -0.52
TPM3-212ENST00000368533 WDR78Q5VTH9 848 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 CC2D1AQ6P1N0 951 aaPredicted RBP11.82□□□□□ -0.52
TPM3-212ENST00000368533 CDCA5Q96FF9 252 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 EIF3CQ99613 913 aaKnown RBP11.82□□□□□ -0.52
TPM3-212ENST00000368533 IRX2Q9BZI1 471 aaPredicted RBP11.82□□□□□ -0.52
TPM3-212ENST00000368533 TMOD4Q9NZQ9 345 aa11.82□□□□□ -0.52
TPM3-212ENST00000368533 PHLPP2Q6ZVD8 1323 aa11.81□□□□□ -0.52
TPM3-212ENST00000368533 ACTN2P35609 894 aa11.81□□□□□ -0.52
TPM3-212ENST00000368533 SREBF1P36956 1147 aa11.81□□□□□ -0.52
TPM3-212ENST00000368533 RBL2Q08999 1139 aa11.81□□□□□ -0.52
TPM3-212ENST00000368533 STK4Q13043 487 aa11.81□□□□□ -0.52
TPM3-212ENST00000368533 AP3B2Q13367 1082 aa11.81□□□□□ -0.52
TPM3-212ENST00000368533 BAATQ14032 418 aaPredicted RBP11.81□□□□□ -0.52
TPM3-212ENST00000368533 NT5DC1Q5TFE4 455 aa11.81□□□□□ -0.52
TPM3-212ENST00000368533 MAEAQ7L5Y9 396 aa11.81□□□□□ -0.52
TPM3-212ENST00000368533 GPIHBP1Q8IV16 184 aa11.81□□□□□ -0.52
TPM3-212ENST00000368533 CLEC4DQ8WXI8 215 aa11.81□□□□□ -0.52
TPM3-212ENST00000368533 LARP4BQ92615 738 aaKnown RBP11.81□□□□□ -0.52
TPM3-212ENST00000368533 SLC38A10Q9HBR0 1119 aa11.81□□□□□ -0.52
TPM3-212ENST00000368533 RNF146Q9NTX7 359 aa11.81□□□□□ -0.52
TPM3-212ENST00000368533 TESPA1A2RU30 521 aaPredicted RBP11.81□□□□□ -0.52
TPM3-212ENST00000368533 PPP1R3GB7ZBB8 358 aa11.81□□□□□ -0.52
TPM3-212ENST00000368533 RBAK-RBAKDNI3L0D1 243 aa11.81□□□□□ -0.52
TPM3-212ENST00000368533 TPH2Q8IWU9 490 aa11.81□□□□□ -0.52
TPM3-212ENST00000368533 LPAR1Q92633 364 aa11.81□□□□□ -0.52
TPM3-212ENST00000368533 TRIM9Q9C026 710 aa11.81□□□□□ -0.52
TPM3-212ENST00000368533 AS3MTQ9HBK9 375 aa11.81□□□□□ -0.52
TPM3-212ENST00000368533 SFI1A8K8P3 1242 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 ZBED4O75132 1171 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 CCDC175P0C221 793 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 NR1I3Q14994 352 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 TMEM132BQ14DG7 1078 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 SV2BQ7L1I2 683 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 ETNPPLQ8TBG4 499 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 NELFBQ8WX92 580 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 RAB34Q9BZG1 259 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 SUGCTQ9HAC7 445 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 TADA3O75528 432 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 FXR2P51116 673 aaKnown RBP eCLIP11.8□□□□□ -0.522e-6■■■□□ 15.5
TPM3-212ENST00000368533 MAP3K9P80192 1104 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 LRCH2Q5VUJ6 765 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 TMEM139Q8IV31 216 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 ELOA2Q8IYF1 753 aaPredicted RBP11.8□□□□□ -0.52
TPM3-212ENST00000368533 CNPY4Q8N129 248 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 ANKRD20A12PQ8NF67 263 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 SPATA20Q8TB22 786 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 GSDMAQ96QA5 445 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 FGFBP2Q9BYJ0 223 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 DEF6Q9H4E7 631 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 KCNMB3Q9NPA1 279 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 KBTBD4Q9NVX7 518 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 ZNF112Q9UJU3 913 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 SAMM50Q9Y512 469 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 TMEM150BA6NC51 233 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 GOLGA6L9A6NEM1 432 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 NKRFO15226 690 aaKnown RBP eCLIP11.8□□□□□ -0.52
TPM3-212ENST00000368533 KLRC4O43908 158 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 KRT18P05783 430 aaKnown RBP11.8□□□□□ -0.52
TPM3-212ENST00000368533 ITGB5P18084 799 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 CASP14P31944 242 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 USP11P51784 963 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 USP14P54578 494 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 TBX2Q13207 712 aaPredicted RBP11.8□□□□□ -0.52
TPM3-212ENST00000368533 LEKR1Q6ZMV7 388 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 CATSPER3Q86XQ3 398 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 DDX12PQ92771 950 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 AK8Q96MA6 479 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 UBXN6Q9BZV1 441 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 EXOC1Q9NV70 894 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 TAB2Q9NYJ8 693 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 TELO2Q9Y4R8 837 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 AFG3L2Q9Y4W6 797 aa11.8□□□□□ -0.52
TPM3-212ENST00000368533 RNF207Q6ZRF8 634 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms