RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 OCMP0CE72 109 aaPredicted RBP4.46□□□□□ -1.7
USH2A-202ENST00000366942 SLC2A4P14672 509 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 BRD2P25440 801 aaKnown RBP4.46□□□□□ -1.7
USH2A-202ENST00000366942 AFMP43652 599 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 CRKP46108 304 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 AP2B1P63010 937 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 ZBTB16Q05516 673 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 TTC23Q5W5X9 447 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 LUZP2Q86TE4 346 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 HOMEZQ8IX15 550 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 BAP1Q92560 729 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 TRIM54Q9BYV2 358 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 SBNO2Q9Y2G9 1366 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 GPATCH8Q9UKJ3 1502 aaKnown RBP4.46□□□□□ -1.7
USH2A-202ENST00000366942 PTPRMP28827 1452 aa4.46□□□□□ -1.7
USH2A-202ENST00000366942 USP27XA6NNY8 438 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 DDNO94850 711 aaPredicted RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 ZBTB48P10074 688 aaPredicted RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 ITGA4P13612 1032 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 LAG3P18627 525 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 CHRNA5P30532 468 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 ATP1A2P50993 1020 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 CTSWP56202 376 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 PABPC1LQ4VXU2 614 aaKnown RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 TMTC4Q5T4D3 741 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 EEPD1Q7L9B9 569 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 TAX1BP1Q86VP1 789 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 MICU3Q86XE3 530 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 FAM98AQ8NCA5 519 aaKnown RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 APBB2Q92870 758 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 USP13Q92995 863 aaPredicted RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 DNAJC1Q96KC8 554 aaKnown RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 C16orf45Q96MC5 204 aaPredicted RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 CRACR2AQ9BSW2 395 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 METTL22Q9BUU2 404 aaPredicted RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 VPS37BQ9H9H4 285 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 TRPC7Q9HCX4 862 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 PDRG1Q9NUG6 133 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 SEPT9Q9UHD8 586 aaPredicted RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 SFMBT1Q9UHJ3 866 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 AGTPBP1Q9UPW5 1226 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 ATP6V0A2Q9Y487 856 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 DDX39AO00148 427 aaKnown RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 GPR25O00155 361 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 ASAP2O43150 1006 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 BRAFP15056 766 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 KELP23276 732 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 STAT6P42226 847 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 PAFAH1B1P43034 410 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 ARHGAP4P98171 946 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 SF3B4Q15427 424 aaKnown RBP eCLIP4.45□□□□□ -1.7
USH2A-202ENST00000366942 HADHQ16836 314 aaKnown RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 KIAA0753Q2KHM9 967 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 PLEKHM2Q8IWE5 1019 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 MCPH1Q8NEM0 835 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 MTRQ99707 1265 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 MYOZ2Q9NPC6 264 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 DISC1Q9NRI5 854 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 PCDH10Q9P2E7 1040 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 CPA4Q9UI42 421 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 MTUS1Q9ULD2 1270 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 MRPS23Q9Y3D9 190 aaKnown RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 TTC37Q6PGP7 1564 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 LRRIQ3A6PVS8 624 aaPredicted RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 H3BM21 787 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 MAN2B1O00754 1011 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 TTLL1O95922 423 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 LDHAP00338 332 aaKnown RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 PHKG2P15735 406 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 ARL4AP40617 200 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 COG7P83436 770 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 DTHD1Q6ZMT9 781 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 BANK1Q8NDB2 785 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 FAM149B1Q96BN6 582 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 DCUN1D1Q96GG9 259 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 FAM227BQ96M60 508 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 SPATA33Q96N06 139 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 BBS4Q96RK4 519 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 FAM129AQ9BZQ8 928 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 DEFB129Q9H1M3 183 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 AASDHPPTQ9NRN7 309 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 LUC7L2Q9Y383 392 aaKnown RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 SPATA31A5Q5VU36 1347 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 SPATA31A7Q8IWB4 1347 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 CRB1P82279 1406 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 KIAA0556O60303 1618 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 MAN1A2O60476 641 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 TIPRLO75663 272 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 PCSK1P29120 753 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 RPL21P46778 160 aaKnown RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 LACTBP83111 547 aaPredicted RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 ERCC6LQ2NKX8 1250 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 ALDH1L2Q3SY69 923 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 KRBA2Q6ZNG9 492 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 CPLX4Q7Z7G2 160 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 IFNLR1Q8IU57 520 aaPredicted RBP4.45□□□□□ -1.7
USH2A-202ENST00000366942 CEP120Q8N960 986 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 MIGA1Q8NAN2 632 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 ABHD8Q96I13 439 aa4.45□□□□□ -1.7
USH2A-202ENST00000366942 OSBPL9Q96SU4 736 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms