RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 STK32BQ9NY57 414 aa16.02■□□□□ 0.16
CHD4-201ENST00000357008 IQANK1A0A1B0GTG1 560 aa16.02■□□□□ 0.15
CHD4-201ENST00000357008 TTI1O43156 1089 aa16.02■□□□□ 0.15
CHD4-201ENST00000357008 TOM1L1O75674 476 aa16.02■□□□□ 0.15
CHD4-201ENST00000357008 TRPA1O75762 1119 aa16.02■□□□□ 0.15
CHD4-201ENST00000357008 PTPN12Q05209 780 aaKnown RBP16.02■□□□□ 0.15
CHD4-201ENST00000357008 LLGL1Q15334 1064 aa16.02■□□□□ 0.15
CHD4-201ENST00000357008 LCORLQ8N3X6 602 aa16.02■□□□□ 0.15
CHD4-201ENST00000357008 MCUQ8NE86 351 aa16.02■□□□□ 0.15
CHD4-201ENST00000357008 ANO3Q9BYT9 981 aa16.02■□□□□ 0.15
CHD4-201ENST00000357008 MID2Q9UJV3 735 aa16.02■□□□□ 0.15
CHD4-201ENST00000357008 DARS2Q6PI48 645 aaKnown RBP16.02■□□□□ 0.15
CHD4-201ENST00000357008 ANKRD36BP1Q96IX9 119 aa16.02■□□□□ 0.15
CHD4-201ENST00000357008 PARVGQ9HBI0 331 aa16.02■□□□□ 0.15
CHD4-201ENST00000357008 LGALS16A8MUM7 142 aa16.01■□□□□ 0.15
CHD4-201ENST00000357008 DYNLL1P63167 89 aaKnown RBP16.01■□□□□ 0.15
CHD4-201ENST00000357008 TRIP13Q15645 432 aaPredicted RBP16.01■□□□□ 0.15
CHD4-201ENST00000357008 PDIK1LQ8N165 341 aa16.01■□□□□ 0.15
CHD4-201ENST00000357008 GOLGA8SH3BPF8 625 aa16.01■□□□□ 0.15
CHD4-201ENST00000357008 PRKAB2O43741 272 aa16.01■□□□□ 0.15
CHD4-201ENST00000357008 ATP5HO75947 161 aa16.01■□□□□ 0.15
CHD4-201ENST00000357008 PRKG1Q13976 671 aa16.01■□□□□ 0.15
CHD4-201ENST00000357008 ST13P4Q8IZP2 240 aaPredicted RBP16.01■□□□□ 0.15
CHD4-201ENST00000357008 PCIF1Q9H4Z3 704 aa16.01■□□□□ 0.15
CHD4-201ENST00000357008 SPDYE16A6NNV3 312 aaPredicted RBP16.01■□□□□ 0.15
CHD4-201ENST00000357008 SPDYE2Q495Y8 402 aa16.01■□□□□ 0.15
CHD4-201ENST00000357008 LRRC23Q53EV4 343 aaPredicted RBP16.01■□□□□ 0.15
CHD4-201ENST00000357008 PGBD1Q96JS3 809 aa16.01■□□□□ 0.15
CHD4-201ENST00000357008 CCDC138Q96M89 665 aa16.01■□□□□ 0.15
CHD4-201ENST00000357008 TLR3O15455 904 aaKnown RBP16.01■□□□□ 0.15
CHD4-201ENST00000357008 GGCXP38435 758 aa16.01■□□□□ 0.15
CHD4-201ENST00000357008 DCLK2Q8N568 766 aa16.01■□□□□ 0.15
CHD4-201ENST00000357008 CENPKQ9BS16 269 aa16.01■□□□□ 0.15
CHD4-201ENST00000357008 ORC6Q9Y5N6 252 aa16.01■□□□□ 0.15
CHD4-201ENST00000357008 SYNJ2BP-COX16A0A087WUM0 186 aa16.01■□□□□ 0.15
CHD4-201ENST00000357008 INPP1P49441 399 aa16.01■□□□□ 0.15
CHD4-201ENST00000357008 SPARCL1Q14515 664 aa16.01■□□□□ 0.15
CHD4-201ENST00000357008 KIAA0825Q8IV33 1275 aa16.01■□□□□ 0.15
CHD4-201ENST00000357008 SLC7A3Q8WY07 619 aa16.01■□□□□ 0.15
CHD4-201ENST00000357008 COX16Q9P0S2 106 aa16.01■□□□□ 0.15
CHD4-201ENST00000357008 ERVK-7P63135 1459 aa16.01■□□□□ 0.15
CHD4-201ENST00000357008 ESYT2A0FGR8 921 aa16■□□□□ 0.15
CHD4-201ENST00000357008 MED7O43513 233 aa16■□□□□ 0.15
CHD4-201ENST00000357008 TADA3O75528 432 aa16■□□□□ 0.15
CHD4-201ENST00000357008 ACSL3O95573 720 aa16■□□□□ 0.15
CHD4-201ENST00000357008 DYNLT1P63172 113 aa16■□□□□ 0.15
CHD4-201ENST00000357008 BBS9Q3SYG4 887 aa16■□□□□ 0.15
CHD4-201ENST00000357008 PCGF5Q86SE9 256 aa16■□□□□ 0.15
CHD4-201ENST00000357008 PYROXD1Q8WU10 500 aa16■□□□□ 0.15
CHD4-201ENST00000357008 SEPT9Q9UHD8 586 aaPredicted RBP16■□□□□ 0.15
CHD4-201ENST00000357008 LEMD3Q9Y2U8 911 aa16■□□□□ 0.15
CHD4-201ENST00000357008 MORC2Q9Y6X9 1032 aaPredicted RBP16■□□□□ 0.15
CHD4-201ENST00000357008 PTCH1Q13635 1447 aa16■□□□□ 0.15
CHD4-201ENST00000357008 WDR91A4D1P6 747 aa16■□□□□ 0.15
CHD4-201ENST00000357008 GNGT2O14610 69 aa16■□□□□ 0.15
CHD4-201ENST00000357008 SASH1O94885 1247 aa16■□□□□ 0.15
CHD4-201ENST00000357008 S100BP04271 92 aaPredicted RBP16■□□□□ 0.15
CHD4-201ENST00000357008 PLS3P13797 630 aa16■□□□□ 0.15
CHD4-201ENST00000357008 MIF4GDA9UHW6 222 aaKnown RBP16■□□□□ 0.15
CHD4-201ENST00000357008 NT5C2P49902 561 aa16■□□□□ 0.15
CHD4-201ENST00000357008 ART3Q13508 389 aa16■□□□□ 0.15
CHD4-201ENST00000357008 LARP7Q4G0J3 582 aaKnown RBP eCLIP16■□□□□ 0.15
CHD4-201ENST00000357008 DNAAF3Q8N9W5 541 aa16■□□□□ 0.15
CHD4-201ENST00000357008 TSC22D3Q99576 134 aa16■□□□□ 0.15
CHD4-201ENST00000357008 PALMO75781 387 aa16■□□□□ 0.15
CHD4-201ENST00000357008 SYT2Q8N9I0 419 aaPredicted RBP16■□□□□ 0.15
CHD4-201ENST00000357008 SUDS3Q9H7L9 328 aaPredicted RBP16■□□□□ 0.15
CHD4-201ENST00000357008 SORBS3O60504 671 aa16■□□□□ 0.15
CHD4-201ENST00000357008 HSPA8P11142 646 aaKnown RBP16■□□□□ 0.15
CHD4-201ENST00000357008 TOB2Q14106 344 aaPredicted RBP16■□□□□ 0.15
CHD4-201ENST00000357008 KCTD6Q8NC69 237 aa16■□□□□ 0.15
CHD4-201ENST00000357008 CALN1Q9BXU9 219 aa16■□□□□ 0.15
CHD4-201ENST00000357008 ANKRD65E5RJM6 399 aa16■□□□□ 0.15
CHD4-201ENST00000357008 MEIS1O00470 390 aa16■□□□□ 0.15
CHD4-201ENST00000357008 IL1RL1Q01638 556 aa16■□□□□ 0.15
CHD4-201ENST00000357008 DCAF15Q66K64 600 aa16■□□□□ 0.15
CHD4-201ENST00000357008 CCNYQ8ND76 341 aa16■□□□□ 0.15
CHD4-201ENST00000357008 XPOTO43592 962 aaKnown RBP15.99■□□□□ 0.15
CHD4-201ENST00000357008 ARL4AP40617 200 aa15.99■□□□□ 0.15
CHD4-201ENST00000357008 CEP72Q9P209 647 aa15.99■□□□□ 0.15
CHD4-201ENST00000357008 GDAQ9Y2T3 454 aa15.99■□□□□ 0.15
CHD4-201ENST00000357008 CASP2P42575 452 aa15.99■□□□□ 0.15
CHD4-201ENST00000357008 DEUP1Q05D60 604 aa15.99■□□□□ 0.15
CHD4-201ENST00000357008 ALCAMQ13740 583 aa15.99■□□□□ 0.15
CHD4-201ENST00000357008 FMR1NBQ8N0W7 255 aaPredicted RBP15.99■□□□□ 0.15
CHD4-201ENST00000357008 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.99■□□□□ 0.15
CHD4-201ENST00000357008 MAML1Q92585 1016 aa15.99■□□□□ 0.15
CHD4-201ENST00000357008 CLEC17AQ6ZS10 378 aa15.99■□□□□ 0.15
CHD4-201ENST00000357008 SYNGAP1Q96PV0 1343 aa15.99■□□□□ 0.15
CHD4-201ENST00000357008 KDM5CP41229 1560 aa15.99■□□□□ 0.15
CHD4-201ENST00000357008 TCP10L2B9ZVM9 353 aa15.99■□□□□ 0.15
CHD4-201ENST00000357008 SRGAP2O75044 1071 aa15.99■□□□□ 0.15
CHD4-201ENST00000357008 TRAIPQ9BWF2 469 aa15.99■□□□□ 0.15
CHD4-201ENST00000357008 TRIM55Q9BYV6 548 aa15.99■□□□□ 0.15
CHD4-201ENST00000357008 KANSL2Q9H9L4 492 aa15.99■□□□□ 0.15
CHD4-201ENST00000357008 SH3GLB2Q9NR46 395 aa15.99■□□□□ 0.15
CHD4-201ENST00000357008 SCINQ9Y6U3 715 aa15.99■□□□□ 0.15
CHD4-201ENST00000357008 XDHP47989 1333 aa15.99■□□□□ 0.15
CHD4-201ENST00000357008 NCF2P19878 526 aaPredicted RBP15.99■□□□□ 0.15
CHD4-201ENST00000357008 NBPF10Q6P3W6 841 aaKnown RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms