RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 RCOR1Q9UKL0 485 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 SLC6A14Q9UN76 642 aa2.74□□□□□ -1.97
VPS54-202ENST00000354504 SCN4AP35499 1836 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 SPENQ96T58 3664 aaKnown RBP2.73□□□□□ -1.97
VPS54-202ENST00000354504 GOLIM4O00461 696 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 EXOC5O00471 708 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 STX6O43752 255 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 WISP1O95388 367 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 ESRRAP11474 423 aaPredicted RBP2.73□□□□□ -1.97
VPS54-202ENST00000354504 COL8A1P27658 744 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 NTF4P34130 210 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 SOX9P48436 509 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 SARSP49591 514 aaKnown RBP2.73□□□□□ -1.97
VPS54-202ENST00000354504 MCM2P49736 904 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 NRLP54845 237 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 RPS26P62854 115 aaKnown RBP2.73□□□□□ -1.97
VPS54-202ENST00000354504 JAG1P78504 1218 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 GRIN1Q05586 938 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 ZNF252P-AS1Q0IIN9 211 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 TROAPQ12815 778 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 HSP90AB3PQ58FF7 597 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 ARTNQ5T4W7 220 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 PSAPL1Q6NUJ1 521 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 FAM196AQ6ZSG2 479 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 SPATC1Q76KD6 591 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 PLA2G4DQ86XP0 818 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 FMR1NBQ8N0W7 255 aaPredicted RBP2.73□□□□□ -1.97
VPS54-202ENST00000354504 TMEM130Q8N3G9 435 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 TDRD7Q8NHU6 1098 aaKnown RBP2.73□□□□□ -1.97
VPS54-202ENST00000354504 LPIN2Q92539 896 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 APPBP2Q92624 585 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 RILPL2Q969X0 211 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 ADAM19Q9H013 955 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 KCND1Q9NSA2 647 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 INTS13Q9NVM9 706 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 POLLQ9UGP5 575 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 GPN3Q9UHW5 284 aaPredicted RBP2.73□□□□□ -1.97
VPS54-202ENST00000354504 CSADQ9Y600 493 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 ZNF532Q9HCE3 1301 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 STK36Q9NRP7 1315 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 GPAA1O43292 621 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 B3GALT4O96024 378 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 PUM3Q15397 648 aaKnown RBP2.73□□□□□ -1.97
VPS54-202ENST00000354504 TKFCQ3LXA3 575 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 DPY19L2P1Q6NXN4 242 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 CTR9Q6PD62 1173 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 ANKS3Q6ZW76 656 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 RASGRP2Q7LDG7 609 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 TMEM139Q8IV31 216 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 TTC5Q8N0Z6 440 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 SPATA5Q8NB90 893 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 ZBED3Q96IU2 234 aaPredicted RBP2.73□□□□□ -1.97
VPS54-202ENST00000354504 JAKMIP1Q96N16 626 aaKnown RBP2.73□□□□□ -1.97
VPS54-202ENST00000354504 AIFM3Q96NN9 605 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 CAMKK2Q96RR4 588 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 LLPHQ9BRT6 129 aaKnown RBP2.73□□□□□ -1.97
VPS54-202ENST00000354504 KIAA1671Q9BY89 1806 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 GRPEL1Q9HAV7 217 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 FAM86C1Q9NVL1 165 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 ZSWIM5Q9P217 1185 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 RNF112Q9ULX5 631 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 WDR3Q9UNX4 943 aaKnown RBP eCLIP2.73□□□□□ -1.97
VPS54-202ENST00000354504 GREB1Q4ZG55 1949 aa2.73□□□□□ -1.97
VPS54-202ENST00000354504 UPK3BL1B0FP48 263 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 UPK3BL2E5RIL1 263 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 LINC01387J3KSC0 135 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 SMAD7O15105 426 aaKnown RBP2.72□□□□□ -1.97
VPS54-202ENST00000354504 PLSCR1O15162 318 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 NKRFO15226 690 aaKnown RBP eCLIP2.72□□□□□ -1.97
VPS54-202ENST00000354504 CYTH3O43739 400 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 ZNF862O60290 1169 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 DEAF1O75398 565 aaPredicted RBP2.72□□□□□ -1.97
VPS54-202ENST00000354504 SNHG28P0DPA3 235 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 BMP4P12644 408 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 SLC5A1P13866 664 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 GPTP24298 496 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 ADH7P40394 386 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 AFF1P51825 1210 aaKnown RBP2.72□□□□□ -1.97
VPS54-202ENST00000354504 APOBRQ0VD83 1088 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 COL9A2Q14055 689 aaPredicted RBP2.72□□□□□ -1.97
VPS54-202ENST00000354504 RRP1BQ14684 758 aaKnown RBP2.72□□□□□ -1.97
VPS54-202ENST00000354504 PRRT3Q5FWE3 981 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 FBXO11Q86XK2 927 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 LEO1Q8WVC0 666 aaPredicted RBP2.72□□□□□ -1.97
VPS54-202ENST00000354504 WNT8BQ93098 351 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 DPH2Q9BQC3 489 aaPredicted RBP2.72□□□□□ -1.97
VPS54-202ENST00000354504 PDGFDQ9GZP0 370 aaPredicted RBP2.72□□□□□ -1.97
VPS54-202ENST00000354504 NCOA5Q9HCD5 579 aaKnown RBP2.72□□□□□ -1.97
VPS54-202ENST00000354504 CNTNAP1P78357 1384 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 FAM205AQ6ZU69 1335 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 ATG2AQ2TAZ0 1938 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 GSC2O15499 205 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 IFIT2P09913 472 aaKnown RBP2.72□□□□□ -1.97
VPS54-202ENST00000354504 LIFRP42702 1097 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 KIF23Q02241 960 aaPredicted RBP2.72□□□□□ -1.97
VPS54-202ENST00000354504 SBK1Q52WX2 424 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 PARP10Q53GL7 1025 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 OLFM4Q6UX06 510 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 CCDC83Q8IWF9 413 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 HSCBQ8IWL3 235 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms