RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 BEND6Q5SZJ8 279 aaPredicted RBP21.39■■□□□ 1.02
COL9A3-201ENST00000343916 TBC1D5Q92609 795 aa21.39■■□□□ 1.02
COL9A3-201ENST00000343916 MLXIPQ9HAP2 919 aa21.39■■□□□ 1.02
COL9A3-201ENST00000343916 ABCB6Q9NP58 842 aa21.39■■□□□ 1.02
COL9A3-201ENST00000343916 ZCCHC17Q9NP64 241 aaKnown RBP21.39■■□□□ 1.02
COL9A3-201ENST00000343916 RGPD3A6NKT7 1758 aaPredicted RBP21.39■■□□□ 1.02
COL9A3-201ENST00000343916 RGPD4Q7Z3J3 1758 aa21.39■■□□□ 1.02
COL9A3-201ENST00000343916 CCDC66A2RUB6 948 aa21.39■■□□□ 1.01
COL9A3-201ENST00000343916 RPA1P27694 616 aa21.39■■□□□ 1.01
COL9A3-201ENST00000343916 GIT2Q14161 759 aa21.39■■□□□ 1.01
COL9A3-201ENST00000343916 FOXR2Q6PJQ5 311 aa21.39■■□□□ 1.01
COL9A3-201ENST00000343916 SAMD1Q6SPF0 538 aaPredicted RBP21.39■■□□□ 1.01
COL9A3-201ENST00000343916 DRC1Q96MC2 740 aa21.39■■□□□ 1.01
COL9A3-201ENST00000343916 REEP2Q9BRK0 252 aa21.39■■□□□ 1.01
COL9A3-201ENST00000343916 JADE2Q9NQC1 790 aa21.39■■□□□ 1.01
COL9A3-201ENST00000343916 FRMD3A2A2Y4 597 aa21.38■■□□□ 1.01
COL9A3-201ENST00000343916 RAD17O75943 681 aa21.38■■□□□ 1.01
COL9A3-201ENST00000343916 NOL4O94818 638 aa21.38■■□□□ 1.01
COL9A3-201ENST00000343916 GFPT1Q06210 699 aaPredicted RBP21.38■■□□□ 1.01
COL9A3-201ENST00000343916 ADAM9Q13443 819 aa21.38■■□□□ 1.01
COL9A3-201ENST00000343916 SMC1AQ14683 1233 aaKnown RBP21.38■■□□□ 1.01
COL9A3-201ENST00000343916 PDXDC1Q6P996 788 aa21.38■■□□□ 1.01
COL9A3-201ENST00000343916 DNM3Q9UQ16 869 aa21.38■■□□□ 1.01
COL9A3-201ENST00000343916 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.38■■□□□ 1.01
COL9A3-201ENST00000343916 POTEB2H3BUK9 544 aa21.38■■□□□ 1.01
COL9A3-201ENST00000343916 FOSP01100 380 aaPredicted RBP21.38■■□□□ 1.01
COL9A3-201ENST00000343916 ZNF76P36508 570 aa21.38■■□□□ 1.01
COL9A3-201ENST00000343916 MMP14P50281 582 aa21.38■■□□□ 1.01
COL9A3-201ENST00000343916 STAT2P52630 851 aa21.38■■□□□ 1.01
COL9A3-201ENST00000343916 BTNL9Q6UXG8 535 aa21.38■■□□□ 1.01
COL9A3-201ENST00000343916 SFR1Q86XK3 245 aa21.38■■□□□ 1.01
COL9A3-201ENST00000343916 CDAN1Q8IWY9 1227 aa21.38■■□□□ 1.01
COL9A3-201ENST00000343916 ERMNQ8TAM6 284 aa21.38■■□□□ 1.01
COL9A3-201ENST00000343916 RGL1Q9NZL6 768 aa21.38■■□□□ 1.01
COL9A3-201ENST00000343916 RSPH10B2B2RC85 870 aa21.37■■□□□ 1.01
COL9A3-201ENST00000343916 EML1O00423 815 aa21.37■■□□□ 1.01
COL9A3-201ENST00000343916 TBX3O15119 743 aa21.37■■□□□ 1.01
COL9A3-201ENST00000343916 MOCS3O95396 460 aa21.37■■□□□ 1.01
COL9A3-201ENST00000343916 CFBP00751 764 aa21.37■■□□□ 1.01
COL9A3-201ENST00000343916 RSPH10BP0C881 870 aa21.37■■□□□ 1.01
COL9A3-201ENST00000343916 HOXA7P31268 230 aaPredicted RBP21.37■■□□□ 1.01
COL9A3-201ENST00000343916 ZYXQ15942 572 aaKnown RBP21.37■■□□□ 1.01
COL9A3-201ENST00000343916 FAM83BQ5T0W9 1011 aa21.37■■□□□ 1.01
COL9A3-201ENST00000343916 TRIM59Q8IWR1 403 aa21.37■■□□□ 1.01
COL9A3-201ENST00000343916 ANKRD13CQ8N6S4 541 aa21.37■■□□□ 1.01
COL9A3-201ENST00000343916 ZFP91Q96JP5 570 aaPredicted RBP21.37■■□□□ 1.01
COL9A3-201ENST00000343916 CEP63Q96MT8 703 aa21.37■■□□□ 1.01
COL9A3-201ENST00000343916 LSM14BQ9BX40 385 aaKnown RBP21.37■■□□□ 1.01
COL9A3-201ENST00000343916 UBXN6Q9BZV1 441 aa21.37■■□□□ 1.01
COL9A3-201ENST00000343916 SH2D4AQ9H788 454 aa21.37■■□□□ 1.01
COL9A3-201ENST00000343916 PITPNM2Q9BZ72 1349 aa21.37■■□□□ 1.01
COL9A3-201ENST00000343916 A0A0U1RQG5 324 aaPredicted RBP21.37■■□□□ 1.01
COL9A3-201ENST00000343916 OAS2P29728 719 aaKnown RBP21.37■■□□□ 1.01
COL9A3-201ENST00000343916 POLR2FP61218 127 aaKnown RBP21.37■■□□□ 1.01
COL9A3-201ENST00000343916 UBXN2AP68543 259 aa21.37■■□□□ 1.01
COL9A3-201ENST00000343916 TDRD12Q587J7 1177 aaKnown RBP21.37■■□□□ 1.01
COL9A3-201ENST00000343916 HGSNATQ68CP4 663 aa21.37■■□□□ 1.01
COL9A3-201ENST00000343916 CCDC174Q6PII3 467 aa21.37■■□□□ 1.01
COL9A3-201ENST00000343916 SYT2Q8N9I0 419 aaPredicted RBP21.37■■□□□ 1.01
COL9A3-201ENST00000343916 HNRNPLLQ8WVV9 542 aaKnown RBP21.37■■□□□ 1.01
COL9A3-201ENST00000343916 TSGA10Q9BZW7 698 aa21.37■■□□□ 1.01
COL9A3-201ENST00000343916 BHMT2Q9H2M3 363 aa21.37■■□□□ 1.01
COL9A3-201ENST00000343916 VAV3Q9UKW4 847 aa21.37■■□□□ 1.01
COL9A3-201ENST00000343916 ZBTB12Q9Y330 459 aaPredicted RBP21.37■■□□□ 1.01
COL9A3-201ENST00000343916 MYH10P35580 1976 aa21.36■■□□□ 1.01
COL9A3-201ENST00000343916 SPDYE2BA6NHP3 402 aa21.36■■□□□ 1.01
COL9A3-201ENST00000343916 USO1O60763 962 aaKnown RBP21.36■■□□□ 1.01
COL9A3-201ENST00000343916 SPDYE6P0CI01 402 aa21.36■■□□□ 1.01
COL9A3-201ENST00000343916 NR2F2P24468 414 aa21.36■■□□□ 1.01
COL9A3-201ENST00000343916 SLC15A2Q16348 729 aa21.36■■□□□ 1.01
COL9A3-201ENST00000343916 FAM20AQ96MK3 541 aa21.36■■□□□ 1.01
COL9A3-201ENST00000343916 SALL4Q9UJQ4 1053 aa21.36■■□□□ 1.01
COL9A3-201ENST00000343916 PDE2AO00408 941 aaPredicted RBP21.36■■□□□ 1.01
COL9A3-201ENST00000343916 CIITAP33076 1130 aa21.36■■□□□ 1.01
COL9A3-201ENST00000343916 TUBB4BP68371 445 aa21.36■■□□□ 1.01
COL9A3-201ENST00000343916 MAP2K7O14733 419 aa21.35■■□□□ 1.01
COL9A3-201ENST00000343916 TLR2O60603 784 aa21.35■■□□□ 1.01
COL9A3-201ENST00000343916 PRPF6O94906 941 aaKnown RBP21.35■■□□□ 1.01
COL9A3-201ENST00000343916 LCA5LO95447 670 aa21.35■■□□□ 1.01
COL9A3-201ENST00000343916 MYBP10242 640 aa21.35■■□□□ 1.01
COL9A3-201ENST00000343916 RUSC1Q9BVN2 902 aa21.35■■□□□ 1.01
COL9A3-201ENST00000343916 TMOD2Q9NZR1 351 aa21.35■■□□□ 1.01
COL9A3-201ENST00000343916 UTRNP46939 3433 aa21.35■■□□□ 1.01
COL9A3-201ENST00000343916 CYP2C19P33261 490 aa21.35■■□□□ 1.01
COL9A3-201ENST00000343916 HOXD13P35453 343 aa21.35■■□□□ 1.01
COL9A3-201ENST00000343916 ASTE1Q2TB18 679 aaPredicted RBP21.35■■□□□ 1.01
COL9A3-201ENST00000343916 PIGOQ8TEQ8 1089 aa21.35■■□□□ 1.01
COL9A3-201ENST00000343916 EIF2AK1Q9BQI3 630 aaKnown RBP21.35■■□□□ 1.01
COL9A3-201ENST00000343916 PDGFDQ9GZP0 370 aaPredicted RBP21.35■■□□□ 1.01
COL9A3-201ENST00000343916 CEP72Q9P209 647 aa21.35■■□□□ 1.01
COL9A3-201ENST00000343916 HERC5Q9UII4 1024 aaKnown RBP21.35■■□□□ 1.01
COL9A3-201ENST00000343916 IGLV3-22A0A075B6J6 115 aa21.34■■□□□ 1.01
COL9A3-201ENST00000343916 ANO9A1A5B4 782 aa21.34■■□□□ 1.01
COL9A3-201ENST00000343916 SFI1A8K8P3 1242 aa21.34■■□□□ 1.01
COL9A3-201ENST00000343916 CHMP2AO43633 222 aa21.34■■□□□ 1.01
COL9A3-201ENST00000343916 ERLIN1O75477 346 aa21.34■■□□□ 1.01
COL9A3-201ENST00000343916 GNA14O95837 355 aa21.34■■□□□ 1.01
COL9A3-201ENST00000343916 MARSP56192 900 aaKnown RBP21.34■■□□□ 1.01
COL9A3-201ENST00000343916 ARID5AQ03989 594 aa21.34■■□□□ 1.01
COL9A3-201ENST00000343916 ENOX2Q16206 610 aaKnown RBP21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms