RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 CCND2P30279 289 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 SPAG1Q07617 926 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 ITGB3BPQ13352 177 aaPredicted RBP14.91□□□□□ -0.02
HMGB1-202ENST00000339872 KCNJ12Q14500 433 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 ARSHQ5FYA8 562 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 MAP1SQ66K74 1059 aaPredicted RBP14.91□□□□□ -0.02
HMGB1-202ENST00000339872 B3GNT9Q6UX72 402 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 ANKRD20A12PQ8NF67 263 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 PIGOQ8TEQ8 1089 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 BTBD7Q9P203 1132 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 KCNH4Q9UQ05 1017 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 KIAA1217Q5T5P2 1943 aa14.9□□□□□ -0.02
HMGB1-202ENST00000339872 LOXHD1Q8IVV2 1947 aa14.9□□□□□ -0.02
HMGB1-202ENST00000339872 EYA4O95677 639 aa14.9□□□□□ -0.02
HMGB1-202ENST00000339872 KRT31Q15323 416 aa14.9□□□□□ -0.02
HMGB1-202ENST00000339872 EPHA7Q15375 998 aa14.9□□□□□ -0.02
HMGB1-202ENST00000339872 TCP11X2Q5H9J9 407 aa14.9□□□□□ -0.02
HMGB1-202ENST00000339872 FAM26FQ5R3K3 315 aa14.9□□□□□ -0.02
HMGB1-202ENST00000339872 MB21D1Q8N884 522 aa14.9□□□□□ -0.02
HMGB1-202ENST00000339872 NSUN6Q8TEA1 469 aaKnown RBP14.9□□□□□ -0.02
HMGB1-202ENST00000339872 ZHX3Q9H4I2 956 aa14.9□□□□□ -0.02
HMGB1-202ENST00000339872 ADD3Q9UEY8 706 aaKnown RBP14.9□□□□□ -0.02
HMGB1-202ENST00000339872 TRAF5O00463 557 aa14.89□□□□□ -0.03
HMGB1-202ENST00000339872 DHX15O43143 795 aaKnown RBP14.89□□□□□ -0.03
HMGB1-202ENST00000339872 NR3C2P08235 984 aa14.89□□□□□ -0.03
HMGB1-202ENST00000339872 NR1I3Q14994 352 aa14.89□□□□□ -0.03
HMGB1-202ENST00000339872 LRRC41Q15345 812 aa14.89□□□□□ -0.03
HMGB1-202ENST00000339872 FILIP1LQ4L180 1135 aa14.89□□□□□ -0.03
HMGB1-202ENST00000339872 ANKRD40Q6AI12 368 aa14.89□□□□□ -0.03
HMGB1-202ENST00000339872 MIER3Q7Z3K6 550 aa14.89□□□□□ -0.03
HMGB1-202ENST00000339872 C17orf53Q8N3J3 647 aaPredicted RBP14.89□□□□□ -0.03
HMGB1-202ENST00000339872 GUF1Q8N442 669 aaKnown RBP14.89□□□□□ -0.03
HMGB1-202ENST00000339872 KCTD17Q8N5Z5 321 aa14.89□□□□□ -0.03
HMGB1-202ENST00000339872 CSGALNACT2Q8N6G5 542 aa14.89□□□□□ -0.03
HMGB1-202ENST00000339872 CCDC150Q8NCX0 1101 aa14.89□□□□□ -0.03
HMGB1-202ENST00000339872 GLIS3Q8NEA6 775 aa14.89□□□□□ -0.03
HMGB1-202ENST00000339872 CHST13Q8NET6 341 aa14.89□□□□□ -0.03
HMGB1-202ENST00000339872 DUSP9Q99956 384 aaKnown RBP14.89□□□□□ -0.03
HMGB1-202ENST00000339872 SRRTQ9BXP5 876 aaKnown RBP14.89□□□□□ -0.03
HMGB1-202ENST00000339872 ASCC2Q9H1I8 757 aaPredicted RBP14.89□□□□□ -0.03
HMGB1-202ENST00000339872 THAP9Q9H5L6 903 aa14.89□□□□□ -0.03
HMGB1-202ENST00000339872 TBC1D7Q9P0N9 293 aa14.89□□□□□ -0.03
HMGB1-202ENST00000339872 LIMA1Q9UHB6 759 aaKnown RBP14.89□□□□□ -0.03
HMGB1-202ENST00000339872 AGTPBP1Q9UPW5 1226 aa14.89□□□□□ -0.03
HMGB1-202ENST00000339872 XRRA1Q6P2D8 792 aa14.89□□□□□ -0.03
HMGB1-202ENST00000339872 BANK1Q8NDB2 785 aa14.89□□□□□ -0.03
HMGB1-202ENST00000339872 REEP2Q9BRK0 252 aa14.89□□□□□ -0.03
HMGB1-202ENST00000339872 LXNQ9BS40 222 aa14.89□□□□□ -0.03
HMGB1-202ENST00000339872 PAGR1Q9BTK6 254 aa14.89□□□□□ -0.03
HMGB1-202ENST00000339872 TEX33O43247 280 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 MUTP22033 750 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 SFPQP23246 707 aaKnown RBP eCLIP14.88□□□□□ -0.03
HMGB1-202ENST00000339872 HERVK_113P62684 666 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 GIT2Q14161 759 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 HERC4Q5GLZ8 1057 aaPredicted RBP14.88□□□□□ -0.03
HMGB1-202ENST00000339872 LDLRAD1Q5T700 205 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 SPECC1LQ69YQ0 1117 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 ARMCX5Q6P1M9 558 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 VSIG10LQ86VR7 867 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 IRF2BP1Q8IU81 584 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 RIOX2Q8IUF8 465 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 ANKRD35Q8N283 1001 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 KIAA1524Q8TCG1 905 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 NOC3LQ8WTT2 800 aaKnown RBP14.88□□□□□ -0.03
HMGB1-202ENST00000339872 RUSC1Q9BVN2 902 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 SEMA6BQ9H3T3 888 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 TBC1D22BQ9NU19 505 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 TAB2Q9NYJ8 693 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 WRAP73Q9P2S5 460 aaPredicted RBP14.88□□□□□ -0.03
HMGB1-202ENST00000339872 SAMM50Q9Y512 469 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 FRMD3A2A2Y4 597 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 COPB1P53618 953 aaKnown RBP14.88□□□□□ -0.03
HMGB1-202ENST00000339872 CENPPQ6IPU0 288 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 MYOCDQ8IZQ8 938 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 NEK9Q8TD19 979 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 EEF2KMTQ96G04 330 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 FGFBP2Q9BYJ0 223 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 SPATC1LQ9H0A9 340 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 VPS16Q9H269 839 aa14.88□□□□□ -0.03
HMGB1-202ENST00000339872 MAGEC2Q9UBF1 373 aaPredicted RBP14.88□□□□□ -0.03
HMGB1-202ENST00000339872 N4BP3O15049 544 aa14.87□□□□□ -0.03
HMGB1-202ENST00000339872 ZBTB39O15060 712 aa14.87□□□□□ -0.03
HMGB1-202ENST00000339872 ATP9AO75110 1047 aa14.87□□□□□ -0.03
HMGB1-202ENST00000339872 GJA5P36382 358 aa14.87□□□□□ -0.03
HMGB1-202ENST00000339872 FASTKD5Q7L8L6 764 aaKnown RBP14.87□□□□□ -0.03
HMGB1-202ENST00000339872 NLRX1Q86UT6 975 aa14.87□□□□□ -0.03
HMGB1-202ENST00000339872 NCAPG2Q86XI2 1143 aa14.87□□□□□ -0.03
HMGB1-202ENST00000339872 NACC1Q96RE7 527 aa14.87□□□□□ -0.03
HMGB1-202ENST00000339872 MAF1Q9H063 256 aa14.87□□□□□ -0.03
HMGB1-202ENST00000339872 FBXO40Q9UH90 709 aa14.87□□□□□ -0.03
HMGB1-202ENST00000339872 DOCK5Q9H7D0 1870 aa14.87□□□□□ -0.03
HMGB1-202ENST00000339872 EEF1GP26641 437 aaKnown RBP14.87□□□□□ -0.03
HMGB1-202ENST00000339872 CCZ1BP86790 482 aa14.87□□□□□ -0.03
HMGB1-202ENST00000339872 CCZ1P86791 482 aaPredicted RBP14.87□□□□□ -0.03
HMGB1-202ENST00000339872 MOGSQ13724 837 aa14.87□□□□□ -0.03
HMGB1-202ENST00000339872 RINT1Q6NUQ1 792 aa14.87□□□□□ -0.03
HMGB1-202ENST00000339872 GPRASP2Q96D09 838 aa14.87□□□□□ -0.03
HMGB1-202ENST00000339872 SLC10A4Q96EP9 437 aa14.87□□□□□ -0.03
HMGB1-202ENST00000339872 TCEAL9Q9UHQ7 104 aa14.87□□□□□ -0.03
HMGB1-202ENST00000339872 PCDHA2Q9Y5H9 948 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms