RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 LSG1Q9H089 658 aaKnown RBP6.63□□□□□ -1.35
CSMD1-201ENST00000335551 BLZF1Q9H2G9 400 aa6.63□□□□□ -1.35
CSMD1-201ENST00000335551 PARVGQ9HBI0 331 aa6.63□□□□□ -1.35
CSMD1-201ENST00000335551 USP40Q9NVE5 1235 aa6.63□□□□□ -1.35
CSMD1-201ENST00000335551 IL1RAPL1Q9NZN1 696 aa6.63□□□□□ -1.35
CSMD1-201ENST00000335551 IQSEC3Q9UPP2 1182 aaPredicted RBP6.63□□□□□ -1.35
CSMD1-201ENST00000335551 GAS7O60861 476 aa6.63□□□□□ -1.35
CSMD1-201ENST00000335551 UHMK1Q8TAS1 419 aaKnown RBP6.63□□□□□ -1.35
CSMD1-201ENST00000335551 MED10Q9BTT4 135 aa6.63□□□□□ -1.35
CSMD1-201ENST00000335551 ETNK1Q9HBU6 452 aa6.63□□□□□ -1.35
CSMD1-201ENST00000335551 NOVA2Q9UNW9 492 aaKnown RBP6.63□□□□□ -1.35
CSMD1-201ENST00000335551 MORC2Q9Y6X9 1032 aaPredicted RBP6.63□□□□□ -1.35
CSMD1-201ENST00000335551 RSPH10B2B2RC85 870 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 CCDC188H7C350 402 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 CCDC22O60826 627 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 RSPH10BP0C881 870 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 KPNB1Q14974 876 aaKnown RBP6.62□□□□□ -1.35
CSMD1-201ENST00000335551 NDUFA5Q16718 116 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 RHBDL2Q9NX52 303 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 AATFQ9NY61 560 aaKnown RBP eCLIP6.62□□□□□ -1.35
CSMD1-201ENST00000335551 GCNT4Q9P109 453 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 M0QZ92 97 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 PTPREP23469 700 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 MAPK4P31152 587 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 PPARGP37231 505 aaPredicted RBP6.62□□□□□ -1.35
CSMD1-201ENST00000335551 TRIM69Q86WT6 500 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 PYROXD1Q8WU10 500 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 NUP160Q12769 1436 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 TARSL2A2RTX5 802 aaKnown RBP6.62□□□□□ -1.35
CSMD1-201ENST00000335551 ZMYND10O75800 440 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 SRGAP2CP0DJJ0 459 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 ARL4CP56559 192 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 NR5A1Q13285 461 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 CAPRIN1Q14444 709 aaKnown RBP6.62□□□□□ -1.35
CSMD1-201ENST00000335551 EFTUD2Q15029 972 aaKnown RBP eCLIP6.62□□□□□ -1.35
CSMD1-201ENST00000335551 KLHL38Q2WGJ6 581 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 SPDYE1Q8NFV5 336 aaPredicted RBP6.62□□□□□ -1.35
CSMD1-201ENST00000335551 HIC2Q96JB3 615 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 MRPL47Q9HD33 250 aaKnown RBP6.62□□□□□ -1.35
CSMD1-201ENST00000335551 RTEL1Q9NZ71 1219 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 PKD2L1Q9P0L9 805 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 HESX1Q9UBX0 185 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 KRT87PA6NCN2 255 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 WASLO00401 505 aaPredicted RBP6.62□□□□□ -1.35
CSMD1-201ENST00000335551 PODXLO00592 558 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 COPEO14579 308 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 CASP14P31944 242 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 CRYMQ14894 314 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 BTNL9Q6UXG8 535 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 RASSF3Q86WH2 238 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 NCOA5Q9HCD5 579 aaKnown RBP6.62□□□□□ -1.35
CSMD1-201ENST00000335551 ZNF839A8K0R7 811 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 M0R3G1 203 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 PIK3R2O00459 728 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 DDX5P17844 614 aaKnown RBP6.62□□□□□ -1.35
CSMD1-201ENST00000335551 GGCXP38435 758 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 HSPA9P38646 679 aaKnown RBP6.62□□□□□ -1.35
CSMD1-201ENST00000335551 SP4Q02446 784 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 ACTN3Q08043 901 aaPredicted RBP6.62□□□□□ -1.35
CSMD1-201ENST00000335551 TSTA3Q13630 321 aaPredicted RBP6.62□□□□□ -1.35
CSMD1-201ENST00000335551 DNAAF3Q8N9W5 541 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 FAM161BQ96MY7 647 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 PRPF18Q99633 342 aaKnown RBP6.62□□□□□ -1.35
CSMD1-201ENST00000335551 ADNPQ9H2P0 1102 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 UBAP1Q9NZ09 502 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 K7ENM7 598 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 DIAPH2O60879 1101 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 DMC1Q14565 340 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 RNF217Q8TC41 542 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 ARHGEF12Q9NZN5 1544 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 KPNA7A9QM74 516 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 DTNBO60941 627 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 TOMM70O94826 608 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 DLGAP3O95886 979 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 DDHD1Q8NEL9 900 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 TUBGCP2Q9BSJ2 902 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 ADA2Q9NZK5 511 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 THOC5Q13769 683 aaKnown RBP6.62□□□□□ -1.35
CSMD1-201ENST00000335551 KCTD6Q8NC69 237 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 LINS1Q8NG48 757 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 NFU1Q9UMS0 254 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 CITO14578 2027 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 ZNF233A6NK53 670 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 GOLGA8MH3BSY2 632 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 IFRD2Q12894 506 aaPredicted RBP6.62□□□□□ -1.35
CSMD1-201ENST00000335551 C4orf50Q6ZRC1 276 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 V9GY48 417 aaPredicted RBP6.62□□□□□ -1.35
CSMD1-201ENST00000335551 ZMYM6O95789 1325 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 MBD4O95243 580 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 FAM178BQ8IXR5 827 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 GPT2Q8TD30 523 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 SCG3Q8WXD2 468 aaKnown RBP6.62□□□□□ -1.35
CSMD1-201ENST00000335551 ANKRD27Q96NW4 1050 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 ELAC2Q9BQ52 826 aaKnown RBP6.62□□□□□ -1.35
CSMD1-201ENST00000335551 RAD21L1Q9H4I0 556 aa6.62□□□□□ -1.35
CSMD1-201ENST00000335551 ARID1BQ8NFD5 2236 aaPredicted RBP6.62□□□□□ -1.35
CSMD1-201ENST00000335551 CCDC88CQ9P219 2028 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 POLR3AO14802 1390 aaPredicted RBP6.61□□□□□ -1.35
CSMD1-201ENST00000335551 RASA4BC9J798 803 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 ENC1O14682 589 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms