RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 MYO5AQ9Y4I1 1855 aaKnown RBP1.98□□□□□ -2.09
LINC00643-201ENST00000334389 ANK2Q01484 3957 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 ARHGEF37A1IGU5 675 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 C3orf80F5H4A9 247 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 VWA5AO00534 786 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 AXIN1O15169 862 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 RHOBTB1O94844 696 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 ELAVL4P26378 380 aaKnown RBP1.98□□□□□ -2.09
LINC00643-201ENST00000334389 OXCT1P55809 520 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 ANGPT1Q15389 498 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 HLFQ16534 295 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 DUSP28Q4G0W2 176 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 SERINC5Q86VE9 423 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 ZNF276Q8N554 614 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 GIMAP8Q8ND71 665 aaPredicted RBP1.98□□□□□ -2.09
LINC00643-201ENST00000334389 ROBO4Q8WZ75 1007 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 C14orf79Q96F83 325 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 PLEKHA4Q9H4M7 779 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 SLC28A3Q9HAS3 691 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 NYAP2Q9P242 653 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 GMEB2Q9UKD1 530 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 CDV3Q9UKY7 258 aaKnown RBP1.98□□□□□ -2.09
LINC00643-201ENST00000334389 CMYA5Q8N3K9 4069 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 CACNA1BQ00975 2339 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 SLC26A4O43511 780 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 F2P00734 622 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 F12P00748 615 aaPredicted RBP1.97□□□□□ -2.09
LINC00643-201ENST00000334389 DDX6P26196 483 aaKnown RBP eCLIP1.97□□□□□ -2.09
LINC00643-201ENST00000334389 GJA4P35212 333 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 IL12RB1P42701 662 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 FOXO4P98177 505 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 GRIN1Q05586 938 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 FZD5Q13467 585 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 TDGQ13569 410 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 DSC3Q14574 896 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 GPNMBQ14956 572 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 RNF43Q68DV7 783 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 JARID2Q92833 1246 aaPredicted RBP1.97□□□□□ -2.09
LINC00643-201ENST00000334389 ZNF578Q96N58 590 aaPredicted RBP1.97□□□□□ -2.09
LINC00643-201ENST00000334389 BRD9Q9H8M2 597 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 SPC25Q9HBM1 224 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 SLC24A3Q9HC58 644 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 CHST12Q9NRB3 414 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 PICK1Q9NRD5 415 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 BAHCC1Q9P281 2608 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 NEDD4P46934 1319 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 FAM171A2A8MVW0 826 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 SCAMP1O15126 338 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 UFL1O94874 794 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 ZRANB2O95218 330 aaKnown RBP eCLIP1.97□□□□□ -2.09
LINC00643-201ENST00000334389 KCNK5O95279 499 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 IL4RP24394 825 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 RDXP35241 583 aaKnown RBP1.97□□□□□ -2.09
LINC00643-201ENST00000334389 MCCD1P59942 119 aaPredicted RBP1.97□□□□□ -2.09
LINC00643-201ENST00000334389 FOXK1P85037 733 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 TEFQ10587 303 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 CAMK2BQ13554 666 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 TBC1D10BQ4KMP7 808 aaPredicted RBP1.97□□□□□ -2.09
LINC00643-201ENST00000334389 CDCP2Q5VXM1 449 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 PLPP4Q5VZY2 271 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 CREB3L3Q68CJ9 461 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 IL27RAQ6UWB1 636 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 KSR2Q6VAB6 950 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 COPS6Q7L5N1 327 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 TMPRSS12Q86WS5 348 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 C1orf210Q8IVY1 113 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 WDR63Q8IWG1 891 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 TMEM192Q8IY95 271 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 LINS1Q8NG48 757 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 STAMQ92783 540 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 TNPO1Q92973 898 aaKnown RBP1.97□□□□□ -2.09
LINC00643-201ENST00000334389 CCDC97Q96F63 343 aaPredicted RBP1.97□□□□□ -2.09
LINC00643-201ENST00000334389 CTAGE1Q96RT6 745 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 CDC6Q99741 560 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 SENP7Q9BQF6 1050 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 MRPL9Q9BYD2 267 aaKnown RBP1.97□□□□□ -2.09
LINC00643-201ENST00000334389 ALDH8A1Q9H2A2 487 aaPredicted RBP1.97□□□□□ -2.09
LINC00643-201ENST00000334389 COMMD8Q9NX08 183 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 GDE1Q9NZC3 331 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 NKX1-2Q9UD57 310 aaPredicted RBP1.97□□□□□ -2.09
LINC00643-201ENST00000334389 SMG5Q9UPR3 1016 aaKnown RBP1.97□□□□□ -2.09
LINC00643-201ENST00000334389 DNAH7Q8WXX0 4024 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 NOTCH4Q99466 2003 aa1.97□□□□□ -2.09
LINC00643-201ENST00000334389 DENND3A2RUS2 1198 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 TRIM6-TRIM34B2RNG4 842 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 TNFRSF10BO14763 440 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 GLP2RO95838 553 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 PDGFAP04085 211 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 NEFMP07197 916 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 STAG3L1P0CL83 205 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 PLCB2Q00722 1185 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 TROAPQ12815 778 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 HTR4Q13639 388 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 MORC3Q14149 939 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 SMAD1Q15797 465 aaKnown RBP1.96□□□□□ -2.09
LINC00643-201ENST00000334389 CCDC178Q5BJE1 867 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 Q7L0L9 218 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 DDX53Q86TM3 631 aaKnown RBP1.96□□□□□ -2.09
LINC00643-201ENST00000334389 FBXO11Q86XK2 927 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 LSMEM2Q8N112 164 aa1.96□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms