RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 KCNJ6P48051 423 aa15.33■□□□□ 0.04
COL7A1-201ENST00000328333 LARP4BQ92615 738 aaKnown RBP15.33■□□□□ 0.04
COL7A1-201ENST00000328333 BTBD6Q96KE9 485 aa15.33■□□□□ 0.04
COL7A1-201ENST00000328333 NOD1Q9Y239 953 aa15.33■□□□□ 0.04
COL7A1-201ENST00000328333 PLAAQ9Y263 795 aa15.33■□□□□ 0.04
COL7A1-201ENST00000328333 PDE6AP16499 860 aa15.33■□□□□ 0.04
COL7A1-201ENST00000328333 PSMC2P35998 433 aaKnown RBP15.33■□□□□ 0.04
COL7A1-201ENST00000328333 HSPA2P54652 639 aa15.33■□□□□ 0.04
COL7A1-201ENST00000328333 SH3GL2Q99962 352 aa15.33■□□□□ 0.04
COL7A1-201ENST00000328333 NHEJ1Q9H9Q4 299 aaPredicted RBP15.33■□□□□ 0.04
COL7A1-201ENST00000328333 PRR23D1E9PI22 279 aaPredicted RBP15.33■□□□□ 0.04
COL7A1-201ENST00000328333 PRR23D2P0DMB1 279 aaPredicted RBP15.33■□□□□ 0.04
COL7A1-201ENST00000328333 GCOM2Q9BZD3 368 aaPredicted RBP15.33■□□□□ 0.04
COL7A1-201ENST00000328333 GPCPD1Q9NPB8 672 aa15.33■□□□□ 0.04
COL7A1-201ENST00000328333 INTUQ9ULD6 942 aa15.33■□□□□ 0.04
COL7A1-201ENST00000328333 MEIS1O00470 390 aa15.33■□□□□ 0.04
COL7A1-201ENST00000328333 FOSP01100 380 aaPredicted RBP15.33■□□□□ 0.04
COL7A1-201ENST00000328333 CCND1P24385 295 aa15.33■□□□□ 0.04
COL7A1-201ENST00000328333 FAM26FQ5R3K3 315 aa15.33■□□□□ 0.04
COL7A1-201ENST00000328333 PDP2Q9P2J9 529 aa15.33■□□□□ 0.04
COL7A1-201ENST00000328333 MORC2Q9Y6X9 1032 aaPredicted RBP15.33■□□□□ 0.04
COL7A1-201ENST00000328333 GUCY1A3Q02108 690 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 MYO1EQ12965 1108 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 DDX42Q86XP3 938 aaKnown RBP eCLIP15.32■□□□□ 0.04
COL7A1-201ENST00000328333 C3orf20Q8ND61 904 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 IRAK4Q9NWZ3 460 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 TMPRSS15P98073 1019 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 TPH2Q8IWU9 490 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 TTC13Q8NBP0 860 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 SYMPKQ92797 1274 aaKnown RBP15.32■□□□□ 0.04
COL7A1-201ENST00000328333 BLZF1Q9H2G9 400 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 GEMIN8Q9NWZ8 242 aaKnown RBP15.32■□□□□ 0.04
COL7A1-201ENST00000328333 MTMR6Q9Y217 621 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 TMEM191BP0C7N4 346 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 RAB14P61106 215 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 CYP4F22Q6NT55 531 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 CHMP6Q96FZ7 201 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 RBM17Q96I25 401 aaKnown RBP15.32■□□□□ 0.04
COL7A1-201ENST00000328333 RBM41Q96IZ5 413 aaKnown RBP15.32■□□□□ 0.04
COL7A1-201ENST00000328333 DDX28Q9NUL7 540 aaKnown RBP15.32■□□□□ 0.04
COL7A1-201ENST00000328333 HNRNPH2P55795 449 aaKnown RBP15.32■□□□□ 0.04
COL7A1-201ENST00000328333 KCTD6Q8NC69 237 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 RNF26Q9BY78 433 aaPredicted RBP15.32■□□□□ 0.04
COL7A1-201ENST00000328333 MRPS26Q9BYN8 205 aaKnown RBP15.32■□□□□ 0.04
COL7A1-201ENST00000328333 IL10P22301 178 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 TMOD1P28289 359 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 TGS1Q96RS0 853 aaKnown RBP15.32■□□□□ 0.04
COL7A1-201ENST00000328333 FAM129AQ9BZQ8 928 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 TMEM206Q9H813 350 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 GSNP06396 782 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 EDEM3Q9BZQ6 932 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 TRPV6Q9H1D0 765 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 NEUROG2Q9H2A3 272 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 SRGAP2CP0DJJ0 459 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 PSMC1P62191 440 aaKnown RBP15.32■□□□□ 0.04
COL7A1-201ENST00000328333 DNAAF3Q8N9W5 541 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 CYP26B1Q9NR63 512 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 IL1RAPL1Q9NZN1 696 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 ATP11BQ9Y2G3 1177 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 ARL4AP40617 200 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 ARL13BQ3SXY8 428 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 SPATA5Q8NB90 893 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 GDAP1Q8TB36 358 aa15.32■□□□□ 0.04
COL7A1-201ENST00000328333 GPBP1L1Q9HC44 474 aaPredicted RBP15.32■□□□□ 0.04
COL7A1-201ENST00000328333 CDC42BPBQ9Y5S2 1711 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 COPEO14579 308 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 HSPA4LO95757 839 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 ATP6V1G3Q96LB4 118 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 COG4Q9H9E3 785 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 SH3TC1Q8TE82 1336 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 SMCO2A6NFE2 343 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 CARSP49589 748 aaKnown RBP15.31■□□□□ 0.04
COL7A1-201ENST00000328333 THOC5Q13769 683 aaKnown RBP15.31■□□□□ 0.04
COL7A1-201ENST00000328333 NCLNQ969V3 563 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 EPN3Q9H201 632 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 ADGRF5Q8IZF2 1346 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 TNIP2Q8NFZ5 429 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 XAGE2Q96GT9 111 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 PSTPIP2Q9H939 334 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 SERTAD1Q9UHV2 236 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 E7ENQ6 273 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 MRPS25P82663 173 aaKnown RBP15.31■□□□□ 0.04
COL7A1-201ENST00000328333 SLC44A4Q53GD3 710 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 BEND6Q5SZJ8 279 aaPredicted RBP15.31■□□□□ 0.04
COL7A1-201ENST00000328333 DYMQ7RTS9 669 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 NDUFA13Q9P0J0 144 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 PPARGC1AQ9UBK2 798 aaKnown RBP15.31■□□□□ 0.04
COL7A1-201ENST00000328333 ADCY3O60266 1144 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 TBC1D1Q86TI0 1168 aaPredicted RBP15.31■□□□□ 0.04
COL7A1-201ENST00000328333 MXD3Q9BW11 206 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 SLC12A6Q9UHW9 1150 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 SUFUQ9UMX1 484 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 IVNS1ABPQ9Y6Y0 642 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 TRADDQ15628 312 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 VPS54Q9P1Q0 977 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 AP4S1Q9Y587 144 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 CCDC15Q0P6D6 951 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 DCDC2Q9UHG0 476 aa15.31■□□□□ 0.04
COL7A1-201ENST00000328333 ARL6IP4Q66PJ3 421 aaKnown RBP15.3■□□□□ 0.04
COL7A1-201ENST00000328333 A0A0G2JND7 137 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms