RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 NEDD1Q8NHV4 660 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 AENQ8WTP8 325 aaKnown RBP11.54□□□□□ -0.56
COL3A1-202ENST00000317840 TLR10Q9BXR5 811 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 PCDHB13Q9Y5F0 798 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 NPHP3-ACAD11A0A0J9YXS1 232 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 MEIS1O00470 390 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 GLI1P08151 1106 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 IFI16Q16666 785 aaKnown RBP11.54□□□□□ -0.56
COL3A1-202ENST00000317840 DNAAF5Q86Y56 855 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 JDP2Q8WYK2 163 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 MMTAG2Q9BU76 263 aaKnown RBP11.54□□□□□ -0.56
COL3A1-202ENST00000317840 KCNQ5Q9NR82 932 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 EMILIN3Q9NT22 766 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 BLOC1S4Q9NUP1 217 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 PKD2L1Q9P0L9 805 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 ARMCX3Q9UH62 379 aaPredicted RBP11.54□□□□□ -0.56
COL3A1-202ENST00000317840 FLT1P17948 1338 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 MYH10P35580 1976 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 AGPSO00116 658 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 EIF3HO15372 352 aaKnown RBP eCLIP11.54□□□□□ -0.56
COL3A1-202ENST00000317840 CDK17Q00537 523 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 PABPC4Q13310 644 aaKnown RBP eCLIP11.54□□□□□ -0.56
COL3A1-202ENST00000317840 NAA35Q5VZE5 725 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 MIGA2Q7L4E1 593 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 PEX26Q7Z412 305 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 KCNK18Q7Z418 384 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 ADAT2Q7Z6V5 191 aaKnown RBP11.54□□□□□ -0.56
COL3A1-202ENST00000317840 PACS2Q86VP3 889 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 NT5C3AQ9H0P0 336 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 CEP72Q9P209 647 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 SIK3Q9Y2K2 1263 aa11.54□□□□□ -0.56
COL3A1-202ENST00000317840 GLI3P10071 1580 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 POTEB3A0JP26 581 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 POTECB2RU33 542 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 USP17L15C9J2P7 530 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 USP17L13C9JLJ4 530 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 USP17L11C9JVI0 530 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 USP17L18D6R9N7 530 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 USP17L22D6RA61 530 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 USP17L17D6RBQ6 530 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 USP17L19D6RCP7 530 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 USP17L20D6RJB6 530 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 TBCAO75347 108 aaKnown RBP11.53□□□□□ -0.56
COL3A1-202ENST00000317840 CTNNA1P35221 906 aaKnown RBP11.53□□□□□ -0.56
COL3A1-202ENST00000317840 CYP4A11Q02928 519 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 SLC20A2Q08357 652 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 USP17L24Q0WX57 530 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 USP17L6PQ6QN14 398 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 POTEBQ6S5H4 581 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 RNF10Q8N5U6 811 aaKnown RBP11.53□□□□□ -0.56
COL3A1-202ENST00000317840 EFCC1Q9HA90 598 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 SERPINB13Q9UIV8 391 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 SALL4Q9UJQ4 1053 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 A0A087X0T9 212 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 GOLGA6L7A0A1B0GV03 622 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 SMIM23A6NLE4 172 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 GCOM1H8Y6P7 765 aaPredicted RBP11.53□□□□□ -0.56
COL3A1-202ENST00000317840 FAM228BP0C875 321 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 MYZAPP0CAP1 466 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 NR1D1P20393 614 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 RDXP35241 583 aaKnown RBP11.53□□□□□ -0.56
COL3A1-202ENST00000317840 BAG6P46379 1132 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 ICE2Q659A1 982 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 MASTLQ96GX5 879 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 ATP6V0A2Q9Y487 856 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 PLA2G4BP0C869 781 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 XRCC5P13010 732 aaKnown RBP11.53□□□□□ -0.56
COL3A1-202ENST00000317840 PRR16Q569H4 304 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 KLHDC7AQ5VTJ3 777 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 PNMA5Q96PV4 448 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 PACSIN1Q9BY11 444 aa11.53□□□□□ -0.56
COL3A1-202ENST00000317840 TLDC2A0PJX2 215 aa11.52□□□□□ -0.56
COL3A1-202ENST00000317840 KRIT1O00522 736 aa11.52□□□□□ -0.56
COL3A1-202ENST00000317840 PPP1R12BO60237 982 aaPredicted RBP11.52□□□□□ -0.56
COL3A1-202ENST00000317840 RPS6KA5O75582 802 aa11.52□□□□□ -0.56
COL3A1-202ENST00000317840 ACTN1P12814 892 aa11.52□□□□□ -0.56
COL3A1-202ENST00000317840 PSMD2Q13200 908 aa11.52□□□□□ -0.56
COL3A1-202ENST00000317840 TTBK2Q6IQ55 1244 aa11.52□□□□□ -0.56
COL3A1-202ENST00000317840 CCDC113Q9H0I3 377 aa11.52□□□□□ -0.56
COL3A1-202ENST00000317840 DPH5Q9H2P9 285 aa11.52□□□□□ -0.56
COL3A1-202ENST00000317840 RNF14Q9UBS8 474 aa11.52□□□□□ -0.56
COL3A1-202ENST00000317840 HDAC9Q9UKV0 1011 aa11.52□□□□□ -0.56
COL3A1-202ENST00000317840 SSU72P8A0A1W2PR75 194 aa11.52□□□□□ -0.57
COL3A1-202ENST00000317840 GNA14O95837 355 aa11.52□□□□□ -0.57
COL3A1-202ENST00000317840 FAM153BP0C7A2 387 aa11.52□□□□□ -0.57
COL3A1-202ENST00000317840 ABCB4P21439 1286 aa11.52□□□□□ -0.57
COL3A1-202ENST00000317840 HMGB2P26583 209 aaKnown RBP11.52□□□□□ -0.57
COL3A1-202ENST00000317840 KCNH2Q12809 1159 aa11.52□□□□□ -0.57
COL3A1-202ENST00000317840 DLGAP5Q15398 846 aa11.52□□□□□ -0.57
COL3A1-202ENST00000317840 EXOC3L4Q17RC7 722 aa11.52□□□□□ -0.57
COL3A1-202ENST00000317840 FAM153CQ494X1 144 aa11.52□□□□□ -0.57
COL3A1-202ENST00000317840 CERKLQ49MI3 558 aaPredicted RBP11.52□□□□□ -0.57
COL3A1-202ENST00000317840 FBXW10Q5XX13 1052 aa11.52□□□□□ -0.57
COL3A1-202ENST00000317840 DAAM2Q86T65 1068 aa11.52□□□□□ -0.57
COL3A1-202ENST00000317840 ARFGAP2Q8N6H7 521 aa11.52□□□□□ -0.57
COL3A1-202ENST00000317840 FLAD1Q8NFF5 587 aa11.52□□□□□ -0.57
COL3A1-202ENST00000317840 ZNF277Q9NRM2 450 aaPredicted RBP11.52□□□□□ -0.57
COL3A1-202ENST00000317840 FAM153AQ9UHL3 310 aa11.52□□□□□ -0.57
COL3A1-202ENST00000317840 ZBTB12Q9Y330 459 aaPredicted RBP11.52□□□□□ -0.57
COL3A1-202ENST00000317840 LRP6O75581 1613 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms