RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 HOMER2Q9NSB8 354 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 COL20A1Q9P218 1284 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 FZD1Q9UP38 647 aa17■□□□□ 0.31
SF3B4-201ENST00000271628 POLR2AP24928 1970 aaKnown RBP16.99■□□□□ 0.31
SF3B4-201ENST00000271628 SSC5DA1L4H1 1573 aa16.99■□□□□ 0.31
SF3B4-201ENST00000271628 A0A1W2PQC6 194 aa16.99■□□□□ 0.31
SF3B4-201ENST00000271628 LGALS16A8MUM7 142 aa16.99■□□□□ 0.31
SF3B4-201ENST00000271628 ARP10275 920 aa16.99■□□□□ 0.31
SF3B4-201ENST00000271628 PSMC6P62333 389 aa16.99■□□□□ 0.31
SF3B4-201ENST00000271628 RPS6P62753 249 aaKnown RBP16.99■□□□□ 0.31
SF3B4-201ENST00000271628 CYP4A11Q02928 519 aa16.99■□□□□ 0.31
SF3B4-201ENST00000271628 RNF207Q6ZRF8 634 aa16.99■□□□□ 0.31
SF3B4-201ENST00000271628 CATSPERGQ6ZRH7 1159 aa16.99■□□□□ 0.31
SF3B4-201ENST00000271628 L2HGDHQ9H9P8 463 aa16.99■□□□□ 0.31
SF3B4-201ENST00000271628 HOXC10Q9NYD6 342 aa16.99■□□□□ 0.31
SF3B4-201ENST00000271628 ZNF215Q9UL58 517 aaPredicted RBP16.99■□□□□ 0.31
SF3B4-201ENST00000271628 RBBP6Q7Z6E9 1792 aaKnown RBP16.99■□□□□ 0.31
SF3B4-201ENST00000271628 FRMPD4Q14CM0 1322 aa16.99■□□□□ 0.31
SF3B4-201ENST00000271628 MYPNQ86TC9 1320 aa16.99■□□□□ 0.31
SF3B4-201ENST00000271628 PPP1R12BO60237 982 aaPredicted RBP16.98■□□□□ 0.31
SF3B4-201ENST00000271628 SLITRK3O94933 977 aa16.98■□□□□ 0.31
SF3B4-201ENST00000271628 ITGB5P18084 799 aa16.98■□□□□ 0.31
SF3B4-201ENST00000271628 RBL2Q08999 1139 aa16.98■□□□□ 0.31
SF3B4-201ENST00000271628 PABPC4Q13310 644 aaKnown RBP eCLIP16.98■□□□□ 0.318e-52■■■□□ 15.9
SF3B4-201ENST00000271628 EPHA7Q15375 998 aa16.98■□□□□ 0.31
SF3B4-201ENST00000271628 SH3D19Q5HYK7 790 aa16.98■□□□□ 0.31
SF3B4-201ENST00000271628 TMEM139Q8IV31 216 aa16.98■□□□□ 0.31
SF3B4-201ENST00000271628 MB21D1Q8N884 522 aa16.98■□□□□ 0.31
SF3B4-201ENST00000271628 NEK9Q8TD19 979 aa16.98■□□□□ 0.31
SF3B4-201ENST00000271628 CNOT6LQ96LI5 555 aaKnown RBP16.98■□□□□ 0.31
SF3B4-201ENST00000271628 ATP2A1O14983 1001 aa16.98■□□□□ 0.31
SF3B4-201ENST00000271628 MAP3K9P80192 1104 aa16.98■□□□□ 0.31
SF3B4-201ENST00000271628 GIT2Q14161 759 aa16.98■□□□□ 0.31
SF3B4-201ENST00000271628 UTP14CQ5TAP6 766 aaKnown RBP16.98■□□□□ 0.31
SF3B4-201ENST00000271628 DPY19L2Q6NUT2 758 aa16.98■□□□□ 0.31
SF3B4-201ENST00000271628 B3GNT9Q6UX72 402 aa16.98■□□□□ 0.31
SF3B4-201ENST00000271628 BHMT2Q9H2M3 363 aa16.98■□□□□ 0.31
SF3B4-201ENST00000271628 KCNH7Q9NS40 1196 aa16.98■□□□□ 0.31
SF3B4-201ENST00000271628 RGL1Q9NZL6 768 aa16.98■□□□□ 0.31
SF3B4-201ENST00000271628 PCDHA2Q9Y5H9 948 aa16.98■□□□□ 0.31
SF3B4-201ENST00000271628 UBIAD1Q9Y5Z9 338 aa16.98■□□□□ 0.31
SF3B4-201ENST00000271628 ZSCAN20P17040 1043 aaPredicted RBP16.97■□□□□ 0.31
SF3B4-201ENST00000271628 MTIF2P46199 727 aaKnown RBP16.97■□□□□ 0.31
SF3B4-201ENST00000271628 XRRA1Q6P2D8 792 aa16.97■□□□□ 0.31
SF3B4-201ENST00000271628 TPH2Q8IWU9 490 aa16.97■□□□□ 0.31
SF3B4-201ENST00000271628 REPS2Q8NFH8 660 aa16.97■□□□□ 0.31
SF3B4-201ENST00000271628 ZNF507Q8TCN5 953 aa16.97■□□□□ 0.31
SF3B4-201ENST00000271628 DYDC2Q96IM9 177 aa16.97■□□□□ 0.31
SF3B4-201ENST00000271628 NACC1Q96RE7 527 aa16.97■□□□□ 0.31
SF3B4-201ENST00000271628 JADE2Q9NQC1 790 aa16.97■□□□□ 0.31
SF3B4-201ENST00000271628 RNF146Q9NTX7 359 aa16.97■□□□□ 0.31
SF3B4-201ENST00000271628 PES1O00541 588 aaKnown RBP16.97■□□□□ 0.31
SF3B4-201ENST00000271628 ZSCAN12O43309 604 aa16.97■□□□□ 0.31
SF3B4-201ENST00000271628 CHMP2AO43633 222 aa16.97■□□□□ 0.31
SF3B4-201ENST00000271628 MFAP3LO75121 409 aa16.97■□□□□ 0.31
SF3B4-201ENST00000271628 GYPCP04921 128 aa16.97■□□□□ 0.31
SF3B4-201ENST00000271628 CASP14P31944 242 aa16.97■□□□□ 0.31
SF3B4-201ENST00000271628 FKBP3Q00688 224 aaKnown RBP16.97■□□□□ 0.31
SF3B4-201ENST00000271628 GOLGA8FQ08AF8 430 aa16.97■□□□□ 0.31
SF3B4-201ENST00000271628 GOLGA8DPQ0D2H9 430 aa16.97■□□□□ 0.31
SF3B4-201ENST00000271628 NAA30Q147X3 362 aaPredicted RBP16.97■□□□□ 0.31
SF3B4-201ENST00000271628 TKFCQ3LXA3 575 aa16.97■□□□□ 0.31
SF3B4-201ENST00000271628 ZNF397Q8NF99 534 aaPredicted RBP16.97■□□□□ 0.31
SF3B4-201ENST00000271628 CPLX3Q8WVH0 158 aa16.97■□□□□ 0.31
SF3B4-201ENST00000271628 TAAR1Q96RJ0 339 aa16.97■□□□□ 0.31
SF3B4-201ENST00000271628 RMDN3Q96TC7 470 aa16.97■□□□□ 0.31
SF3B4-201ENST00000271628 NPHP3-ACAD11A0A0J9YXS1 232 aa16.96■□□□□ 0.31
SF3B4-201ENST00000271628 MTMR1Q13613 665 aa16.96■□□□□ 0.31
SF3B4-201ENST00000271628 PRKG1Q13976 671 aa16.96■□□□□ 0.31
SF3B4-201ENST00000271628 CTTNQ14247 550 aaKnown RBP16.96■□□□□ 0.31
SF3B4-201ENST00000271628 PGM5Q15124 567 aa16.96■□□□□ 0.31
SF3B4-201ENST00000271628 LRRC41Q15345 812 aa16.96■□□□□ 0.31
SF3B4-201ENST00000271628 SNRNP48Q6IEG0 339 aaKnown RBP16.96■□□□□ 0.31
SF3B4-201ENST00000271628 NSMFQ6X4W1 530 aa16.96■□□□□ 0.31
SF3B4-201ENST00000271628 NOC4LQ9BVI4 516 aaKnown RBP16.96■□□□□ 0.31
SF3B4-201ENST00000271628 UNC45AQ9H3U1 944 aa16.96■□□□□ 0.31
SF3B4-201ENST00000271628 TBC1D22BQ9NU19 505 aa16.96■□□□□ 0.31
SF3B4-201ENST00000271628 KCND2Q9NZV8 630 aa16.96■□□□□ 0.31
SF3B4-201ENST00000271628 ZNF214Q9UL59 606 aaPredicted RBP16.96■□□□□ 0.31
SF3B4-201ENST00000271628 CSADQ9Y600 493 aa16.96■□□□□ 0.31
SF3B4-201ENST00000271628 RLFQ13129 1914 aa16.96■□□□□ 0.31
SF3B4-201ENST00000271628 SPDYE4A6NLX3 237 aa16.95■□□□□ 0.3
SF3B4-201ENST00000271628 ETF1P62495 437 aaKnown RBP16.95■□□□□ 0.3
SF3B4-201ENST00000271628 MRPS9P82933 396 aaKnown RBP16.95■□□□□ 0.3
SF3B4-201ENST00000271628 DMTNQ08495 405 aa16.95■□□□□ 0.3
SF3B4-201ENST00000271628 VGLL4Q14135 290 aa16.95■□□□□ 0.3
SF3B4-201ENST00000271628 ARHGEF16Q5VV41 709 aa16.95■□□□□ 0.3
SF3B4-201ENST00000271628 C9orf131Q5VYM1 1079 aa16.95■□□□□ 0.3
SF3B4-201ENST00000271628 PPP4R3CPQ6ZMV5 832 aa16.95■□□□□ 0.3
SF3B4-201ENST00000271628 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.95■□□□□ 0.3
SF3B4-201ENST00000271628 REEP2Q9BRK0 252 aa16.95■□□□□ 0.3
SF3B4-201ENST00000271628 NUP58Q9BVL2 599 aa16.95■□□□□ 0.3
SF3B4-201ENST00000271628 TEX13BQ9BXU2 312 aa16.95■□□□□ 0.3
SF3B4-201ENST00000271628 ZHX3Q9H4I2 956 aa16.95■□□□□ 0.3
SF3B4-201ENST00000271628 PXMP2Q9NR77 195 aa16.95■□□□□ 0.3
SF3B4-201ENST00000271628 DDX41Q9UJV9 622 aaKnown RBP16.95■□□□□ 0.3
SF3B4-201ENST00000271628 RIPK3Q9Y572 518 aa16.95■□□□□ 0.3
SF3B4-201ENST00000271628 COL4A3BPQ9Y5P4 624 aa16.95■□□□□ 0.3
SF3B4-201ENST00000271628 SNCAIPQ9Y6H5 919 aa16.95■□□□□ 0.3
SF3B4-201ENST00000271628 EIF2AK2P19525 551 aaKnown RBP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms