RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 TM4SF1P30408 202 aa30.17■■■□□ 2.42
CBX4-201ENST00000269397 HERC4Q5GLZ8 1057 aaPredicted RBP30.17■■■□□ 2.42
CBX4-201ENST00000269397 CD302Q8IX05 232 aa30.17■■■□□ 2.42
CBX4-201ENST00000269397 TAF1DQ9H5J8 278 aaPredicted RBP30.17■■■□□ 2.42
CBX4-201ENST00000269397 RIOX1Q9H6W3 641 aa30.17■■■□□ 2.42
CBX4-201ENST00000269397 ESYT2A0FGR8 921 aa30.16■■■□□ 2.42
CBX4-201ENST00000269397 FAM170AA1A519 330 aa30.16■■■□□ 2.42
CBX4-201ENST00000269397 HSD17B3P37058 310 aa30.16■■■□□ 2.42
CBX4-201ENST00000269397 IFT88Q13099 833 aa30.16■■■□□ 2.42
CBX4-201ENST00000269397 CNPY4Q8N129 248 aa30.16■■■□□ 2.42
CBX4-201ENST00000269397 BCCIPQ9P287 314 aaKnown RBP eCLIP30.16■■■□□ 2.42
CBX4-201ENST00000269397 DDX25Q9UHL0 483 aaKnown RBP30.16■■■□□ 2.42
CBX4-201ENST00000269397 KIAA1024Q9UPX6 916 aa30.16■■■□□ 2.42
CBX4-201ENST00000269397 NAV1Q8NEY1 1877 aa30.15■■■□□ 2.42
CBX4-201ENST00000269397 ECHS1P30084 290 aa30.15■■■□□ 2.42
CBX4-201ENST00000269397 ORC2Q13416 577 aaPredicted RBP30.15■■■□□ 2.42
CBX4-201ENST00000269397 ADAM9Q13443 819 aa30.15■■■□□ 2.42
CBX4-201ENST00000269397 PRPF38AQ8NAV1 312 aaKnown RBP30.15■■■□□ 2.42
CBX4-201ENST00000269397 NEUROG2Q9H2A3 272 aa30.15■■■□□ 2.42
CBX4-201ENST00000269397 SLC9A1P19634 815 aa30.15■■■□□ 2.42
CBX4-201ENST00000269397 HSPA9P38646 679 aaKnown RBP30.15■■■□□ 2.42
CBX4-201ENST00000269397 KCNH2Q12809 1159 aa30.15■■■□□ 2.42
CBX4-201ENST00000269397 SCFD1Q8WVM8 642 aa30.15■■■□□ 2.42
CBX4-201ENST00000269397 LRRC27Q9C0I9 530 aa30.15■■■□□ 2.42
CBX4-201ENST00000269397 ROBO1Q9Y6N7 1651 aa30.15■■■□□ 2.42
CBX4-201ENST00000269397 MYH4Q9Y623 1939 aa30.15■■■□□ 2.42
CBX4-201ENST00000269397 BACH1O14867 736 aa30.14■■■□□ 2.42
CBX4-201ENST00000269397 ZNF571Q7Z3V5 609 aaPredicted RBP30.14■■■□□ 2.42
CBX4-201ENST00000269397 DDX47Q9H0S4 455 aaKnown RBP30.14■■■□□ 2.42
CBX4-201ENST00000269397 GANQ9H2C0 597 aa30.14■■■□□ 2.42
CBX4-201ENST00000269397 HMGB1P1B2RPK0 211 aaPredicted RBP30.14■■■□□ 2.42
CBX4-201ENST00000269397 UAP1Q16222 522 aaPredicted RBP30.14■■■□□ 2.42
CBX4-201ENST00000269397 TMBIM4Q9HC24 238 aa30.14■■■□□ 2.42
CBX4-201ENST00000269397 AIPL1Q9NZN9 384 aa30.14■■■□□ 2.42
CBX4-201ENST00000269397 GOLGA6L10A6NI86 522 aa30.13■■■□□ 2.41
CBX4-201ENST00000269397 FLT3P36888 993 aa30.13■■■□□ 2.41
CBX4-201ENST00000269397 SF3B2Q13435 895 aaKnown RBP30.13■■■□□ 2.41
CBX4-201ENST00000269397 NYXQ9GZU5 481 aa30.13■■■□□ 2.41
CBX4-201ENST00000269397 BMP2KQ9NSY1 1161 aaPredicted RBP30.13■■■□□ 2.41
CBX4-201ENST00000269397 TMEM59LQ9UK28 342 aa30.13■■■□□ 2.41
CBX4-201ENST00000269397 PCDHA12Q9UN75 941 aa30.13■■■□□ 2.41
CBX4-201ENST00000269397 COL14A1Q05707 1796 aaKnown RBP30.13■■■□□ 2.41
CBX4-201ENST00000269397 POTEB3A0JP26 581 aa30.13■■■□□ 2.41
CBX4-201ENST00000269397 POTECB2RU33 542 aa30.13■■■□□ 2.41
CBX4-201ENST00000269397 KIF4AO95239 1232 aa30.13■■■□□ 2.41
CBX4-201ENST00000269397 NT5C2P49902 561 aa30.13■■■□□ 2.41
CBX4-201ENST00000269397 POTEBQ6S5H4 581 aa30.13■■■□□ 2.41
CBX4-201ENST00000269397 ISCUQ9H1K1 167 aa30.13■■■□□ 2.41
CBX4-201ENST00000269397 MYBP10242 640 aa30.12■■■□□ 2.41
CBX4-201ENST00000269397 GPBP1Q86WP2 473 aa30.12■■■□□ 2.41
CBX4-201ENST00000269397 GPATCH11Q8N954 259 aa30.12■■■□□ 2.41
CBX4-201ENST00000269397 CEP63Q96MT8 703 aa30.12■■■□□ 2.41
CBX4-201ENST00000269397 EMILIN3Q9NT22 766 aa30.12■■■□□ 2.41
CBX4-201ENST00000269397 TMCO5BA8MYB1 307 aa30.12■■■□□ 2.41
CBX4-201ENST00000269397 LDHCP07864 332 aa30.12■■■□□ 2.41
CBX4-201ENST00000269397 TMOD1P28289 359 aa30.12■■■□□ 2.41
CBX4-201ENST00000269397 CEP89Q96ST8 783 aa30.12■■■□□ 2.41
CBX4-201ENST00000269397 PCDHA2Q9Y5H9 948 aa30.12■■■□□ 2.41
CBX4-201ENST00000269397 DDX60LQ5H9U9 1706 aaKnown RBP30.12■■■□□ 2.41
CBX4-201ENST00000269397 SPATA31A1Q5TZJ5 1347 aa30.11■■■□□ 2.41
CBX4-201ENST00000269397 GCOM1H8Y6P7 765 aaPredicted RBP30.11■■■□□ 2.41
CBX4-201ENST00000269397 PPP1R11O60927 126 aaPredicted RBP30.11■■■□□ 2.41
CBX4-201ENST00000269397 MYZAPP0CAP1 466 aa30.11■■■□□ 2.41
CBX4-201ENST00000269397 SPAG5Q96R06 1193 aa30.11■■■□□ 2.41
CBX4-201ENST00000269397 KCTD10Q9H3F6 313 aa30.11■■■□□ 2.41
CBX4-201ENST00000269397 CTNNA1P35221 906 aaKnown RBP30.11■■■□□ 2.41
CBX4-201ENST00000269397 TPTE2Q6XPS3 522 aa30.11■■■□□ 2.41
CBX4-201ENST00000269397 YY1AP1Q9H869 796 aa30.11■■■□□ 2.41
CBX4-201ENST00000269397 SART1O43290 800 aaKnown RBP30.1■■■□□ 2.41
CBX4-201ENST00000269397 FSBPO95073 299 aa30.1■■■□□ 2.41
CBX4-201ENST00000269397 PLA2G4BP0C869 781 aa30.1■■■□□ 2.41
CBX4-201ENST00000269397 ITGA4P13612 1032 aa30.1■■■□□ 2.41
CBX4-201ENST00000269397 SLC16A2P36021 539 aa30.1■■■□□ 2.41
CBX4-201ENST00000269397 CASP5P51878 434 aa30.1■■■□□ 2.41
CBX4-201ENST00000269397 EMC10Q5UCC4 262 aa30.1■■■□□ 2.41
CBX4-201ENST00000269397 TTBK2Q6IQ55 1244 aa30.1■■■□□ 2.41
CBX4-201ENST00000269397 ARHGAP27Q6ZUM4 889 aa30.1■■■□□ 2.41
CBX4-201ENST00000269397 MICALCLQ6ZW33 695 aa30.1■■■□□ 2.41
CBX4-201ENST00000269397 IRF2BP2Q7Z5L9 587 aa30.1■■■□□ 2.41
CBX4-201ENST00000269397 PLCB1Q9NQ66 1216 aa30.1■■■□□ 2.41
CBX4-201ENST00000269397 FAM107AO95990 144 aa30.1■■■□□ 2.41
CBX4-201ENST00000269397 SWT1Q5T5J6 900 aaKnown RBP30.1■■■□□ 2.41
CBX4-201ENST00000269397 CCDC65Q8IXS2 484 aa30.1■■■□□ 2.41
CBX4-201ENST00000269397 UBLCP1Q8WVY7 318 aaPredicted RBP30.1■■■□□ 2.41
CBX4-201ENST00000269397 KRT18P05783 430 aaKnown RBP30.09■■■□□ 2.41
CBX4-201ENST00000269397 NR2F2P24468 414 aa30.09■■■□□ 2.41
CBX4-201ENST00000269397 SMARCA1P28370 1054 aa30.09■■■□□ 2.41
CBX4-201ENST00000269397 USP11P51784 963 aa30.09■■■□□ 2.41
CBX4-201ENST00000269397 PTF1AQ7RTS3 328 aa30.09■■■□□ 2.41
CBX4-201ENST00000269397 CABS1Q96KC9 395 aa30.09■■■□□ 2.41
CBX4-201ENST00000269397 AMACRQ9UHK6 382 aa30.09■■■□□ 2.41
CBX4-201ENST00000269397 H0YGN5 161 aa30.09■■■□□ 2.41
CBX4-201ENST00000269397 STAT3P40763 770 aa30.09■■■□□ 2.41
CBX4-201ENST00000269397 ZNF844Q08AG5 666 aa30.09■■■□□ 2.41
CBX4-201ENST00000269397 METTL13Q8N6R0 699 aa30.09■■■□□ 2.41
CBX4-201ENST00000269397 NFS1Q9Y697 457 aa30.09■■■□□ 2.41
CBX4-201ENST00000269397 ODF2Q5BJF6 829 aa30.09■■■□□ 2.41
CBX4-201ENST00000269397 SCFD2Q8WU76 684 aa30.09■■■□□ 2.41
CBX4-201ENST00000269397 FBXL5Q9UKA1 691 aa30.09■■■□□ 2.41
CBX4-201ENST00000269397 HDAC9Q9UKV0 1011 aa30.09■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms