RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 TRAPPC10P48553 1259 aa14.42□□□□□ -0.1
SS18-202ENST00000269138 ITGA7Q13683 1181 aa14.42□□□□□ -0.1
SS18-202ENST00000269138 PKP1Q13835 747 aa14.42□□□□□ -0.1
SS18-202ENST00000269138 NBPF20Q3BBV1 942 aa14.42□□□□□ -0.1
SS18-202ENST00000269138 FAM173BQ6P4H8 233 aa14.42□□□□□ -0.1
SS18-202ENST00000269138 FAM20AQ96MK3 541 aa14.42□□□□□ -0.1
SS18-202ENST00000269138 TEKT3Q9BXF9 490 aa14.42□□□□□ -0.1
SS18-202ENST00000269138 A0A0U1RQG5 324 aaPredicted RBP14.41□□□□□ -0.1
SS18-202ENST00000269138 CHMP2AO43633 222 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 MARCH6O60337 910 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 ATG7O95352 703 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 F2P00734 622 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 PSEN2P49810 448 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 RTP1P59025 263 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 CALCRLQ16602 461 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 TRIM60Q495X7 471 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 ZNF746Q6NUN9 644 aaPredicted RBP14.41□□□□□ -0.1
SS18-202ENST00000269138 B3GNT9Q6UX72 402 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 ABHD15Q6UXT9 468 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 C4orf32Q8N8J7 132 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 MTMR9Q96QG7 549 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 VAV3Q9UKW4 847 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 MKI67P46013 3256 aaKnown RBP14.41□□□□□ -0.1
SS18-202ENST00000269138 H3BRB1 525 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 ARVCFO00192 962 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 HAS3O00219 553 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 EML1O00423 815 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 TBX3O15119 743 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 LGR5O75473 907 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 SUPT20HL2P0C7V6 817 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 CDK7P50613 346 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 KRT76Q01546 638 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 MFSD10Q14728 455 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 SNX17Q15036 470 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 KIAA0753Q2KHM9 967 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 RILPL1Q5EBL4 403 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 BRAPQ7Z569 592 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 SLC43A3Q8NBI5 491 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 TUT1Q9H6E5 874 aaKnown RBP14.41□□□□□ -0.1
SS18-202ENST00000269138 ATP11BQ9Y2G3 1177 aa14.41□□□□□ -0.1
SS18-202ENST00000269138 IGKV6D-21A0A0A0MT36 114 aa14.4□□□□□ -0.1
SS18-202ENST00000269138 BAG4O95429 457 aaKnown RBP14.4□□□□□ -0.1
SS18-202ENST00000269138 MARK3P27448 753 aa14.4□□□□□ -0.1
SS18-202ENST00000269138 TXKP42681 527 aa14.4□□□□□ -0.1
SS18-202ENST00000269138 TLE2Q04725 743 aa14.4□□□□□ -0.1
SS18-202ENST00000269138 SWSAP1Q6NVH7 229 aa14.4□□□□□ -0.1
SS18-202ENST00000269138 CCDC60Q8IWA6 550 aaPredicted RBP14.4□□□□□ -0.1
SS18-202ENST00000269138 SLFN12Q8IYM2 578 aa14.4□□□□□ -0.1
SS18-202ENST00000269138 DPF3Q92784 378 aa14.4□□□□□ -0.1
SS18-202ENST00000269138 GLG1Q92896 1179 aa14.4□□□□□ -0.1
SS18-202ENST00000269138 HTATIP2Q9BUP3 242 aa14.4□□□□□ -0.1
SS18-202ENST00000269138 RNPEPQ9H4A4 650 aa14.4□□□□□ -0.1
SS18-202ENST00000269138 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.4□□□□□ -0.1
SS18-202ENST00000269138 DISC1Q9NRI5 854 aa14.4□□□□□ -0.1
SS18-202ENST00000269138 PCDH10Q9P2E7 1040 aa14.4□□□□□ -0.1
SS18-202ENST00000269138 SAMM50Q9Y512 469 aa14.4□□□□□ -0.1
SS18-202ENST00000269138 PCDHA10Q9Y5I2 948 aa14.4□□□□□ -0.1
SS18-202ENST00000269138 BACH1O14867 736 aa14.39□□□□□ -0.11
SS18-202ENST00000269138 PQBP1O60828 265 aaKnown RBP14.39□□□□□ -0.11
SS18-202ENST00000269138 ZSCAN22P10073 491 aaPredicted RBP14.39□□□□□ -0.11
SS18-202ENST00000269138 SPIRE1Q08AE8 756 aa14.39□□□□□ -0.11
SS18-202ENST00000269138 PTGDRQ13258 359 aa14.39□□□□□ -0.11
SS18-202ENST00000269138 PPP2R5CQ13362 524 aa14.39□□□□□ -0.11
SS18-202ENST00000269138 ORC2Q13416 577 aaPredicted RBP14.39□□□□□ -0.11
SS18-202ENST00000269138 C1orf53Q5VUE5 145 aa14.39□□□□□ -0.11
SS18-202ENST00000269138 MIS18BP1Q6P0N0 1132 aa14.39□□□□□ -0.11
SS18-202ENST00000269138 MIER3Q7Z3K6 550 aa14.39□□□□□ -0.11
SS18-202ENST00000269138 TRPV6Q9H1D0 765 aa14.39□□□□□ -0.11
SS18-202ENST00000269138 SMARCAD1Q9H4L7 1026 aa14.39□□□□□ -0.11
SS18-202ENST00000269138 TTC12Q9H892 705 aaPredicted RBP14.39□□□□□ -0.11
SS18-202ENST00000269138 TSHZ2Q9NRE2 1034 aa14.39□□□□□ -0.11
SS18-202ENST00000269138 HDAC6Q9UBN7 1215 aa14.39□□□□□ -0.11
SS18-202ENST00000269138 TCEAL9Q9UHQ7 104 aa14.39□□□□□ -0.11
SS18-202ENST00000269138 WDR64B1ANS9 1081 aa14.38□□□□□ -0.11
SS18-202ENST00000269138 PSAPP07602 524 aa14.38□□□□□ -0.11
SS18-202ENST00000269138 OR52Z1P0C646 297 aa14.38□□□□□ -0.11
SS18-202ENST00000269138 ATP4AP20648 1035 aa14.38□□□□□ -0.11
SS18-202ENST00000269138 STAT5BP51692 787 aa14.38□□□□□ -0.11
SS18-202ENST00000269138 HIC1Q14526 733 aa14.38□□□□□ -0.11
SS18-202ENST00000269138 UGCGQ16739 394 aa14.38□□□□□ -0.11
SS18-202ENST00000269138 FAM47CQ5HY64 1035 aa14.38□□□□□ -0.11
SS18-202ENST00000269138 NCAPH2Q6IBW4 605 aa14.38□□□□□ -0.11
SS18-202ENST00000269138 SMAP1Q8IYB5 467 aaPredicted RBP14.38□□□□□ -0.11
SS18-202ENST00000269138 C7orf61Q8IZ16 206 aa14.38□□□□□ -0.11
SS18-202ENST00000269138 KATNAL1Q9BW62 490 aa14.38□□□□□ -0.11
SS18-202ENST00000269138 FTOQ9C0B1 505 aaKnown RBP eCLIP14.38□□□□□ -0.11
SS18-202ENST00000269138 AZI2Q9H6S1 392 aa14.38□□□□□ -0.11
SS18-202ENST00000269138 GABBR1Q9UBS5 961 aa14.38□□□□□ -0.11
SS18-202ENST00000269138 PCDHA12Q9UN75 941 aa14.38□□□□□ -0.11
SS18-202ENST00000269138 ZDHHC9Q9Y397 364 aa14.38□□□□□ -0.11
SS18-202ENST00000269138 SCN10AQ9Y5Y9 1956 aa14.38□□□□□ -0.11
SS18-202ENST00000269138 EMSYQ7Z589 1322 aa14.38□□□□□ -0.11
SS18-202ENST00000269138 DNAH12Q6ZR08 3092 aa14.37□□□□□ -0.11
SS18-202ENST00000269138 EVI5O60447 810 aa14.37□□□□□ -0.11
SS18-202ENST00000269138 SMIM10L2AP0DMW4 78 aa14.37□□□□□ -0.11
SS18-202ENST00000269138 SMIM10L2BP0DMW5 78 aa14.37□□□□□ -0.11
SS18-202ENST00000269138 SFNP31947 248 aa14.37□□□□□ -0.11
SS18-202ENST00000269138 JAK3P52333 1124 aa14.37□□□□□ -0.11
SS18-202ENST00000269138 ZNF200P98182 395 aaPredicted RBP14.37□□□□□ -0.11
SS18-202ENST00000269138 MLLT1Q03111 559 aaPredicted RBP14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms