RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 KCNA1Q09470 495 aa10.05□□□□□ -0.8
MSH4-201ENST00000263187 KSR1Q8IVT5 923 aa10.05□□□□□ -0.8
MSH4-201ENST00000263187 DNAJC19Q96DA6 116 aa10.05□□□□□ -0.8
MSH4-201ENST00000263187 RPGRIP1Q96KN7 1286 aa10.05□□□□□ -0.8
MSH4-201ENST00000263187 RAB34Q9BZG1 259 aa10.05□□□□□ -0.8
MSH4-201ENST00000263187 RREB1Q92766 1687 aa10.05□□□□□ -0.8
MSH4-201ENST00000263187 A0A1W2PQJ5 194 aa10.05□□□□□ -0.8
MSH4-201ENST00000263187 PLA2G4BP0C869 781 aa10.05□□□□□ -0.8
MSH4-201ENST00000263187 PPP4CP60510 307 aa10.05□□□□□ -0.8
MSH4-201ENST00000263187 FKBP3Q00688 224 aaKnown RBP10.05□□□□□ -0.8
MSH4-201ENST00000263187 NNTQ13423 1086 aa10.05□□□□□ -0.8
MSH4-201ENST00000263187 CFAP221Q4G0U5 840 aa10.05□□□□□ -0.8
MSH4-201ENST00000263187 PRR16Q569H4 304 aa10.05□□□□□ -0.8
MSH4-201ENST00000263187 BMP2KQ9NSY1 1161 aaPredicted RBP10.05□□□□□ -0.8
MSH4-201ENST00000263187 DAGLAQ9Y4D2 1042 aa10.05□□□□□ -0.8
MSH4-201ENST00000263187 GPR75-ASB3A0A0A6YYF3 556 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 RSPH10B2B2RC85 870 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 CEP104O60308 925 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 RSPH10BP0C881 870 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 TCP1P17987 556 aaKnown RBP10.04□□□□□ -0.8
MSH4-201ENST00000263187 SEC24CP53992 1094 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 NFIAQ12857 509 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 MMGT1Q8N4V1 131 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 SPAG5Q96R06 1193 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 KCNQ5Q9NR82 932 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 IRS2Q9Y4H2 1338 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 CASZ1Q86V15 1759 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 MED24O75448 989 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 NR2F2P24468 414 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 HOXA13P31271 388 aaPredicted RBP10.04□□□□□ -0.8
MSH4-201ENST00000263187 COPB2P35606 906 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 KCNH2Q12809 1159 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 CFAP58Q5T655 872 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 PRR5LQ6MZQ0 368 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 DHX37Q8IY37 1157 aaKnown RBP10.04□□□□□ -0.8
MSH4-201ENST00000263187 CYP2W1Q8TAV3 490 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 SCFD1Q8WVM8 642 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 MAGEF1Q9HAY2 307 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 EMILIN3Q9NT22 766 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 USP40Q9NVE5 1235 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 LEMD3Q9Y2U8 911 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 COL5A3P25940 1745 aaPredicted RBP10.04□□□□□ -0.8
MSH4-201ENST00000263187 CHMP2AO43633 222 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 FGFR1OPO95684 399 aaKnown RBP10.04□□□□□ -0.8
MSH4-201ENST00000263187 UBXN2AP68543 259 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 PTK2Q05397 1052 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 PLS1Q14651 629 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 LLGL1Q15334 1064 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 TTC31Q49AM3 519 aaPredicted RBP10.04□□□□□ -0.8
MSH4-201ENST00000263187 FBXW10Q5XX13 1052 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 CASKIN2Q8WXE0 1202 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 RIOX1Q9H6W3 641 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 STK17AQ9UEE5 414 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 PCDHB13Q9Y5F0 798 aa10.04□□□□□ -0.8
MSH4-201ENST00000263187 TAF1LQ8IZX4 1826 aa10.03□□□□□ -0.8
MSH4-201ENST00000263187 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.03□□□□□ -0.8
MSH4-201ENST00000263187 PVALEFA0A1B0GWK0 134 aa10.03□□□□□ -0.8
MSH4-201ENST00000263187 NDUFAB1O14561 156 aa10.03□□□□□ -0.8
MSH4-201ENST00000263187 ZBTB39O15060 712 aa10.03□□□□□ -0.8
MSH4-201ENST00000263187 RAD51CO43502 376 aa10.03□□□□□ -0.8
MSH4-201ENST00000263187 CASP4P49662 377 aa10.03□□□□□ -0.8
MSH4-201ENST00000263187 FXR2P51116 673 aaKnown RBP eCLIP10.03□□□□□ -0.8
MSH4-201ENST00000263187 RBM5P52756 815 aaKnown RBP eCLIP10.03□□□□□ -0.8
MSH4-201ENST00000263187 LRRC63Q05C16 580 aa10.03□□□□□ -0.8
MSH4-201ENST00000263187 MKRN4PQ13434 485 aaPredicted RBP10.03□□□□□ -0.8
MSH4-201ENST00000263187 ASTE1Q2TB18 679 aaPredicted RBP10.03□□□□□ -0.8
MSH4-201ENST00000263187 FIGNQ5HY92 759 aa10.03□□□□□ -0.8
MSH4-201ENST00000263187 CUL5Q93034 780 aa10.03□□□□□ -0.8
MSH4-201ENST00000263187 SEPT11Q9NVA2 429 aaKnown RBP10.03□□□□□ -0.8
MSH4-201ENST00000263187 CHORDC1Q9UHD1 332 aaPredicted RBP10.03□□□□□ -0.8
MSH4-201ENST00000263187 PCDHA1Q9Y5I3 950 aa10.03□□□□□ -0.8
MSH4-201ENST00000263187 ZNF233A6NK53 670 aa10.03□□□□□ -0.8
MSH4-201ENST00000263187 EBAG9O00559 213 aa10.03□□□□□ -0.8
MSH4-201ENST00000263187 MYBP10242 640 aa10.03□□□□□ -0.8
MSH4-201ENST00000263187 EPHB4P54760 987 aa10.03□□□□□ -0.8
MSH4-201ENST00000263187 PRPF4BQ13523 1007 aaKnown RBP10.03□□□□□ -0.8
MSH4-201ENST00000263187 ASIC2Q16515 512 aa10.03□□□□□ -0.8
MSH4-201ENST00000263187 TBC1D10BQ4KMP7 808 aaPredicted RBP10.03□□□□□ -0.8
MSH4-201ENST00000263187 SPICE1Q8N0Z3 855 aa10.03□□□□□ -0.8
MSH4-201ENST00000263187 RNPC3Q96LT9 517 aaKnown RBP10.03□□□□□ -0.8
MSH4-201ENST00000263187 DDX47Q9H0S4 455 aaKnown RBP10.03□□□□□ -0.8
MSH4-201ENST00000263187 ATP6V0A2Q9Y487 856 aa10.03□□□□□ -0.8
MSH4-201ENST00000263187 FAM169AQ9Y6X4 670 aa10.03□□□□□ -0.8
MSH4-201ENST00000263187 SCN7AQ01118 1682 aa10.03□□□□□ -0.8
MSH4-201ENST00000263187 SERPING1P05155 500 aa10.02□□□□□ -0.8
MSH4-201ENST00000263187 HNRNPH3P31942 346 aaKnown RBP10.02□□□□□ -0.8
MSH4-201ENST00000263187 CDK17Q00537 523 aa10.02□□□□□ -0.8
MSH4-201ENST00000263187 PDE4CQ08493 712 aa10.02□□□□□ -0.8
MSH4-201ENST00000263187 CEP85LQ5SZL2 805 aa10.02□□□□□ -0.8
MSH4-201ENST00000263187 RDH13Q8NBN7 331 aa10.02□□□□□ -0.8
MSH4-201ENST00000263187 PIGOQ8TEQ8 1089 aa10.02□□□□□ -0.8
MSH4-201ENST00000263187 PPANQ9NQ55 473 aaKnown RBP10.02□□□□□ -0.8
MSH4-201ENST00000263187 AJAP1Q9UKB5 411 aaPredicted RBP10.02□□□□□ -0.8
MSH4-201ENST00000263187 PNMA6FA0A0J9YX94 578 aa10.02□□□□□ -0.81
MSH4-201ENST00000263187 GRID2IPA4D2P6 1211 aa10.02□□□□□ -0.81
MSH4-201ENST00000263187 G3V3G9 751 aa10.02□□□□□ -0.81
MSH4-201ENST00000263187 GDF11O95390 407 aa10.02□□□□□ -0.81
MSH4-201ENST00000263187 ITGA4P13612 1032 aa10.02□□□□□ -0.81
MSH4-201ENST00000263187 ABCB4P21439 1286 aa10.02□□□□□ -0.81
MSH4-201ENST00000263187 POLD1P28340 1107 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms