RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 WDR19Q8NEZ3 1342 aa17.1■□□□□ 0.33
CLN3-249ENST00000636685 SMARCA5O60264 1052 aaPredicted RBP17.09■□□□□ 0.33
CLN3-249ENST00000636685 RANBP6O60518 1105 aaKnown RBP17.09■□□□□ 0.33
CLN3-249ENST00000636685 ICAM3P32942 547 aa17.09■□□□□ 0.33
CLN3-249ENST00000636685 NUBP1P53384 320 aa17.09■□□□□ 0.33
CLN3-249ENST00000636685 STXBP2Q15833 593 aa17.09■□□□□ 0.33
CLN3-249ENST00000636685 EFHBQ8N7U6 833 aa17.09■□□□□ 0.33
CLN3-249ENST00000636685 RGS22Q8NE09 1264 aa17.09■□□□□ 0.33
CLN3-249ENST00000636685 SEC62Q99442 399 aaKnown RBP17.09■□□□□ 0.33
CLN3-249ENST00000636685 PNMA2Q9UL42 364 aa17.09■□□□□ 0.33
CLN3-249ENST00000636685 PLAGL2Q9UPG8 496 aa17.09■□□□□ 0.33
CLN3-249ENST00000636685 TTC3P53804 2025 aa17.08■□□□□ 0.33
CLN3-249ENST00000636685 C17orf102A2RUQ5 167 aa17.08■□□□□ 0.32
CLN3-249ENST00000636685 TREHO43280 583 aa17.08■□□□□ 0.32
CLN3-249ENST00000636685 GLP2RO95838 553 aa17.08■□□□□ 0.32
CLN3-249ENST00000636685 HOXD8P13378 290 aaPredicted RBP17.08■□□□□ 0.32
CLN3-249ENST00000636685 NRIP1P48552 1158 aa17.08■□□□□ 0.32
CLN3-249ENST00000636685 PTPN21Q16825 1174 aa17.08■□□□□ 0.32
CLN3-249ENST00000636685 FRMD5Q7Z6J6 570 aa17.08■□□□□ 0.32
CLN3-249ENST00000636685 SYTL5Q8TDW5 730 aaPredicted RBP17.08■□□□□ 0.32
CLN3-249ENST00000636685 NSUN6Q8TEA1 469 aaKnown RBP17.08■□□□□ 0.32
CLN3-249ENST00000636685 RIPOR3Q96MK2 946 aa17.08■□□□□ 0.32
CLN3-249ENST00000636685 TMEM47Q9BQJ4 181 aa17.08■□□□□ 0.32
CLN3-249ENST00000636685 RC3H2Q9HBD1 1191 aaKnown RBP17.08■□□□□ 0.32
CLN3-249ENST00000636685 MRVI1Q9Y6F6 885 aa17.08■□□□□ 0.32
CLN3-249ENST00000636685 WDR87Q6ZQQ6 2873 aa17.07■□□□□ 0.32
CLN3-249ENST00000636685 EP300Q09472 2414 aaPredicted RBP17.07■□□□□ 0.32
CLN3-249ENST00000636685 PPFIA4O75335 1185 aa17.07■□□□□ 0.32
CLN3-249ENST00000636685 ZFYP08048 801 aaPredicted RBP17.07■□□□□ 0.32
CLN3-249ENST00000636685 BTG3Q14201 252 aaPredicted RBP17.07■□□□□ 0.32
CLN3-249ENST00000636685 RBM23Q86U06 439 aaKnown RBP17.07■□□□□ 0.32
CLN3-249ENST00000636685 ADSSL1Q8N142 457 aa17.07■□□□□ 0.32
CLN3-249ENST00000636685 APBB2Q92870 758 aa17.07■□□□□ 0.32
CLN3-249ENST00000636685 PPP2R3CQ969Q6 453 aa17.07■□□□□ 0.32
CLN3-249ENST00000636685 RMDN3Q96TC7 470 aa17.07■□□□□ 0.32
CLN3-249ENST00000636685 ECHDC1Q9NTX5 307 aa17.07■□□□□ 0.32
CLN3-249ENST00000636685 MYH6P13533 1939 aa17.07■□□□□ 0.32
CLN3-249ENST00000636685 EPG5Q9HCE0 2579 aa17.07■□□□□ 0.32
CLN3-249ENST00000636685 DNAH14Q0VDD8 3507 aa17.07■□□□□ 0.32
CLN3-249ENST00000636685 MED19A0JLT2 244 aaPredicted RBP17.06■□□□□ 0.32
CLN3-249ENST00000636685 KRT37O76014 449 aa17.06■□□□□ 0.32
CLN3-249ENST00000636685 ITGB1P05556 798 aa17.06■□□□□ 0.32
CLN3-249ENST00000636685 PDHBP11177 359 aa17.06■□□□□ 0.32
CLN3-249ENST00000636685 TOP1P11387 765 aaKnown RBP17.06■□□□□ 0.32
CLN3-249ENST00000636685 EIF2AK2P19525 551 aaKnown RBP17.06■□□□□ 0.32
CLN3-249ENST00000636685 HSDL1Q3SXM5 330 aa17.06■□□□□ 0.32
CLN3-249ENST00000636685 TSHZ3Q63HK5 1081 aa17.06■□□□□ 0.32
CLN3-249ENST00000636685 TMEM105Q8N8V8 129 aa17.06■□□□□ 0.32
CLN3-249ENST00000636685 NKD2Q969F2 451 aaPredicted RBP17.06■□□□□ 0.32
CLN3-249ENST00000636685 IWS1Q96ST2 819 aa17.06■□□□□ 0.32
CLN3-249ENST00000636685 C16orf70Q9BSU1 422 aa17.06■□□□□ 0.32
CLN3-249ENST00000636685 PLVAPQ9BX97 442 aa17.06■□□□□ 0.32
CLN3-249ENST00000636685 PCDHGC5Q9Y5F6 944 aa17.06■□□□□ 0.32
CLN3-249ENST00000636685 TPRP12270 2363 aaKnown RBP17.06■□□□□ 0.32
CLN3-249ENST00000636685 PLXNA4Q9HCM2 1894 aa17.05■□□□□ 0.32
CLN3-249ENST00000636685 NCOR2Q9Y618 2525 aa17.05■□□□□ 0.32
CLN3-249ENST00000636685 KAT6AQ92794 2004 aa17.05■□□□□ 0.32
CLN3-249ENST00000636685 EIF3JO75822 258 aaKnown RBP17.05■□□□□ 0.32
CLN3-249ENST00000636685 SMIM10L2AP0DMW4 78 aa17.05■□□□□ 0.32
CLN3-249ENST00000636685 SMIM10L2BP0DMW5 78 aa17.05■□□□□ 0.32
CLN3-249ENST00000636685 HOXC8P31273 242 aa17.05■□□□□ 0.32
CLN3-249ENST00000636685 RBM10P98175 930 aaKnown RBP17.05■□□□□ 0.32
CLN3-249ENST00000636685 ZNF543Q08ER8 600 aa17.05■□□□□ 0.32
CLN3-249ENST00000636685 MYSM1Q5VVJ2 828 aa17.05■□□□□ 0.32
CLN3-249ENST00000636685 SPPL3Q8TCT6 385 aa17.05■□□□□ 0.32
CLN3-249ENST00000636685 ZNF689Q96CS4 500 aaPredicted RBP17.05■□□□□ 0.32
CLN3-249ENST00000636685 SPATA33Q96N06 139 aa17.05■□□□□ 0.32
CLN3-249ENST00000636685 CPVLQ9H3G5 476 aa17.05■□□□□ 0.32
CLN3-249ENST00000636685 RNPEPQ9H4A4 650 aa17.05■□□□□ 0.32
CLN3-249ENST00000636685 MRPL42Q9Y6G3 142 aaKnown RBP17.05■□□□□ 0.32
CLN3-249ENST00000636685 ZNF292O60281 2723 aa17.05■□□□□ 0.32
CLN3-249ENST00000636685 CAND2O75155 1236 aa17.04■□□□□ 0.32
CLN3-249ENST00000636685 CELF3Q5SZQ8 465 aaKnown RBP17.04■□□□□ 0.32
CLN3-249ENST00000636685 ARHGEF16Q5VV41 709 aa17.04■□□□□ 0.32
CLN3-249ENST00000636685 ZBTB33Q86T24 672 aa17.04■□□□□ 0.32
CLN3-249ENST00000636685 SUSD6Q92537 303 aa17.04■□□□□ 0.32
CLN3-249ENST00000636685 P2RX5Q93086 422 aa17.04■□□□□ 0.32
CLN3-249ENST00000636685 LRRCC1Q9C099 1032 aa17.04■□□□□ 0.32
CLN3-249ENST00000636685 DMXL1Q9Y485 3027 aa17.04■□□□□ 0.32
CLN3-249ENST00000636685 CACNA1GO43497 2377 aa17.03■□□□□ 0.32
CLN3-249ENST00000636685 FOXP2O15409 715 aa17.03■□□□□ 0.32
CLN3-249ENST00000636685 GGPS1O95749 300 aa17.03■□□□□ 0.32
CLN3-249ENST00000636685 NR3C2P08235 984 aa17.03■□□□□ 0.32
CLN3-249ENST00000636685 ATF7P17544 494 aaPredicted RBP17.03■□□□□ 0.32
CLN3-249ENST00000636685 KLHL23Q8NBE8 558 aa17.03■□□□□ 0.32
CLN3-249ENST00000636685 POF1BQ8WVV4 589 aa17.03■□□□□ 0.32
CLN3-249ENST00000636685 DOCK5Q9H7D0 1870 aa17.02■□□□□ 0.32
CLN3-249ENST00000636685 H3BRB1 525 aa17.02■□□□□ 0.32
CLN3-249ENST00000636685 ENPP3O14638 875 aa17.02■□□□□ 0.32
CLN3-249ENST00000636685 DGKIO75912 1065 aa17.02■□□□□ 0.32
CLN3-249ENST00000636685 GHRP10912 638 aa17.02■□□□□ 0.32
CLN3-249ENST00000636685 SP100P23497 879 aaPredicted RBP17.02■□□□□ 0.32
CLN3-249ENST00000636685 FAM26DQ5JW98 314 aa17.02■□□□□ 0.32
CLN3-249ENST00000636685 VN1R2Q8NFZ6 395 aa17.02■□□□□ 0.32
CLN3-249ENST00000636685 UBA5Q9GZZ9 404 aa17.02■□□□□ 0.32
CLN3-249ENST00000636685 TUT1Q9H6E5 874 aaKnown RBP17.02■□□□□ 0.32
CLN3-249ENST00000636685 PXMP2Q9NR77 195 aa17.02■□□□□ 0.32
CLN3-249ENST00000636685 SETD4Q9NVD3 440 aa17.02■□□□□ 0.32
CLN3-249ENST00000636685 ABCB11O95342 1321 aa17.01■□□□□ 0.31
CLN3-249ENST00000636685 PER2O15055 1255 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms