RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 CDHR1Q96JP9 859 aa11.06□□□□□ -0.64
VRK3-224ENST00000601849 C16orf70Q9BSU1 422 aa11.06□□□□□ -0.64
VRK3-224ENST00000601849 RNPEPQ9H4A4 650 aa11.06□□□□□ -0.64
VRK3-224ENST00000601849 SEC63Q9UGP8 760 aaKnown RBP11.06□□□□□ -0.64
VRK3-224ENST00000601849 KIAA1217Q5T5P2 1943 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 TRIP12Q14669 1992 aaPredicted RBP11.05□□□□□ -0.64
VRK3-224ENST00000601849 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.05□□□□□ -0.64
VRK3-224ENST00000601849 SPATA31C2B4DYI2 1134 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 OPLAHO14841 1288 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 TREHO43280 583 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 GPR37L1O60883 481 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 RGS20O76081 388 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 IGHDP01880 384 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 LGALS2P05162 132 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 RPLP2P05387 115 aaKnown RBP11.05□□□□□ -0.64
VRK3-224ENST00000601849 ALADP13716 330 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 KCNA5P22460 613 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 SSTR3P32745 418 aaPredicted RBP11.05□□□□□ -0.64
VRK3-224ENST00000601849 ICAM3P32942 547 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 GNAQP50148 359 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 HTRA4P83105 476 aaPredicted RBP11.05□□□□□ -0.64
VRK3-224ENST00000601849 SP2Q02086 613 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 CSPP1Q1MSJ5 1256 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 LEXMQ3ZCV2 418 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 TIGD5Q53EQ6 642 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 EP400NLQ6ZTU2 488 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 CYFIP1Q7L576 1253 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 TMTC2Q8N394 836 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 MRPL38Q96DV4 380 aaKnown RBP11.05□□□□□ -0.64
VRK3-224ENST00000601849 RRP36Q96EU6 259 aaKnown RBP11.05□□□□□ -0.64
VRK3-224ENST00000601849 SENP7Q9BQF6 1050 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 LZTS2Q9BRK4 669 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 LRFN3Q9BTN0 628 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 EPHX3Q9H6B9 360 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 RWDD3Q9Y3V2 267 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 NRCAMQ92823 1304 aa11.05□□□□□ -0.64
VRK3-224ENST00000601849 TCF20Q9UGU0 1960 aaKnown RBP11.05□□□□□ -0.64
VRK3-224ENST00000601849 PPP1R11O60927 126 aaPredicted RBP11.04□□□□□ -0.64
VRK3-224ENST00000601849 SMARCA1P28370 1054 aa11.04□□□□□ -0.64
VRK3-224ENST00000601849 ARHGAP4P98171 946 aa11.04□□□□□ -0.64
VRK3-224ENST00000601849 GPM6BQ13491 265 aa11.04□□□□□ -0.64
VRK3-224ENST00000601849 MBTPS1Q14703 1052 aa11.04□□□□□ -0.64
VRK3-224ENST00000601849 EPC2Q52LR7 807 aa11.04□□□□□ -0.64
VRK3-224ENST00000601849 UTP14CQ5TAP6 766 aaKnown RBP11.04□□□□□ -0.64
VRK3-224ENST00000601849 PTCRAQ6ISU1 281 aaPredicted RBP11.04□□□□□ -0.64
VRK3-224ENST00000601849 TRAF7Q6Q0C0 670 aa11.04□□□□□ -0.64
VRK3-224ENST00000601849 CASC1Q6TDU7 716 aa11.04□□□□□ -0.64
VRK3-224ENST00000601849 CYB5R4Q7L1T6 521 aa11.04□□□□□ -0.64
VRK3-224ENST00000601849 GJD3Q8N144 294 aa11.04□□□□□ -0.64
VRK3-224ENST00000601849 FIBCD1Q8N539 461 aa11.04□□□□□ -0.64
VRK3-224ENST00000601849 BANK1Q8NDB2 785 aa11.04□□□□□ -0.64
VRK3-224ENST00000601849 IL17RAQ96F46 866 aa11.04□□□□□ -0.64
VRK3-224ENST00000601849 MAP3K14Q99558 947 aa11.04□□□□□ -0.64
VRK3-224ENST00000601849 C17orf80Q9BSJ5 609 aa11.04□□□□□ -0.64
VRK3-224ENST00000601849 IFIH1Q9BYX4 1025 aaKnown RBP11.04□□□□□ -0.64
VRK3-224ENST00000601849 SETD4Q9NVD3 440 aa11.04□□□□□ -0.64
VRK3-224ENST00000601849 RTEL1Q9NZ71 1219 aa11.04□□□□□ -0.64
VRK3-224ENST00000601849 RAPGEFL1Q9UHV5 662 aa11.04□□□□□ -0.64
VRK3-224ENST00000601849 PRRC2BQ5JSZ5 2229 aaKnown RBP11.04□□□□□ -0.64
VRK3-224ENST00000601849 MYH6P13533 1939 aa11.03□□□□□ -0.64
VRK3-224ENST00000601849 PI4K2BG5E9Z4 385 aa11.03□□□□□ -0.64
VRK3-224ENST00000601849 H3BNC9 293 aa11.03□□□□□ -0.64
VRK3-224ENST00000601849 RB1P06400 928 aa11.03□□□□□ -0.64
VRK3-224ENST00000601849 CYP21A2P08686 494 aa11.03□□□□□ -0.64
VRK3-224ENST00000601849 CTSHP09668 335 aa11.03□□□□□ -0.64
VRK3-224ENST00000601849 TROAPQ12815 778 aa11.03□□□□□ -0.64
VRK3-224ENST00000601849 PCNX4Q63HM2 1172 aa11.03□□□□□ -0.64
VRK3-224ENST00000601849 TAF2Q6P1X5 1199 aa11.03□□□□□ -0.64
VRK3-224ENST00000601849 NFXL1Q6ZNB6 911 aa11.03□□□□□ -0.64
VRK3-224ENST00000601849 SPRED2Q7Z698 418 aa11.03□□□□□ -0.64
VRK3-224ENST00000601849 TMEM192Q8IY95 271 aa11.03□□□□□ -0.64
VRK3-224ENST00000601849 SP7Q8TDD2 431 aaPredicted RBP11.03□□□□□ -0.64
VRK3-224ENST00000601849 PIBF1Q8WXW3 757 aa11.03□□□□□ -0.64
VRK3-224ENST00000601849 WNT8BQ93098 351 aa11.03□□□□□ -0.64
VRK3-224ENST00000601849 ZFP91Q96JP5 570 aaPredicted RBP11.03□□□□□ -0.64
VRK3-224ENST00000601849 INPP4AQ96PE3 977 aaPredicted RBP11.03□□□□□ -0.64
VRK3-224ENST00000601849 GPR20Q99678 358 aa11.03□□□□□ -0.64
VRK3-224ENST00000601849 UPF3BQ9BZI7 483 aaKnown RBP11.03□□□□□ -0.64
VRK3-224ENST00000601849 EHMT1Q9H9B1 1298 aa11.03□□□□□ -0.64
VRK3-224ENST00000601849 MYH7BA7E2Y1 1941 aa11.02□□□□□ -0.65
VRK3-224ENST00000601849 CCDC69A6NI79 296 aa11.02□□□□□ -0.65
VRK3-224ENST00000601849 E7EWF7 191 aa11.02□□□□□ -0.65
VRK3-224ENST00000601849 PIK3CDO00329 1044 aa11.02□□□□□ -0.65
VRK3-224ENST00000601849 MAFGO15525 162 aa11.02□□□□□ -0.65
VRK3-224ENST00000601849 CALM1P0DP23 149 aa11.02□□□□□ -0.65
VRK3-224ENST00000601849 CALM2P0DP24 149 aa11.02□□□□□ -0.65
VRK3-224ENST00000601849 CALM3P0DP25 149 aa11.02□□□□□ -0.65
VRK3-224ENST00000601849 MRPS9P82933 396 aaKnown RBP11.02□□□□□ -0.65
VRK3-224ENST00000601849 SP4Q02446 784 aa11.02□□□□□ -0.65
VRK3-224ENST00000601849 TCTN1Q2MV58 587 aa11.02□□□□□ -0.65
VRK3-224ENST00000601849 FAM178BQ8IXR5 827 aa11.02□□□□□ -0.65
VRK3-224ENST00000601849 IL31RAQ8NI17 732 aa11.02□□□□□ -0.65
VRK3-224ENST00000601849 SEPT1Q8WYJ6 367 aa11.02□□□□□ -0.65
VRK3-224ENST00000601849 GLG1Q92896 1179 aa11.02□□□□□ -0.65
VRK3-224ENST00000601849 GPKOWQ92917 476 aaPredicted RBP eCLIP11.02□□□□□ -0.65
VRK3-224ENST00000601849 PPP2R3CQ969Q6 453 aa11.02□□□□□ -0.65
VRK3-224ENST00000601849 PABPC5Q96DU9 382 aaKnown RBP11.02□□□□□ -0.65
VRK3-224ENST00000601849 MTA3Q9BTC8 594 aa11.02□□□□□ -0.65
VRK3-224ENST00000601849 C11orf84Q9BUA3 381 aaPredicted RBP11.02□□□□□ -0.65
VRK3-224ENST00000601849 NSUN3Q9H649 340 aaKnown RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms