RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 RGS22Q8NE09 1264 aa10.07□□□□□ -0.8
TRIM28-214ENST00000600840 DNERQ8NFT8 737 aa10.07□□□□□ -0.8
TRIM28-214ENST00000600840 IPO9Q96P70 1041 aaKnown RBP10.07□□□□□ -0.8
TRIM28-214ENST00000600840 RNF26Q9BY78 433 aaPredicted RBP10.07□□□□□ -0.8
TRIM28-214ENST00000600840 HIPK3Q9H422 1215 aa10.07□□□□□ -0.8
TRIM28-214ENST00000600840 ABCB11O95342 1321 aa10.07□□□□□ -0.8
TRIM28-214ENST00000600840 STK36Q9NRP7 1315 aa10.07□□□□□ -0.8
TRIM28-214ENST00000600840 CHD9Q3L8U1 2897 aa10.06□□□□□ -0.8
TRIM28-214ENST00000600840 TET1Q8NFU7 2136 aa10.06□□□□□ -0.8
TRIM28-214ENST00000600840 LOC102724159A0A0B4J2E5 919 aa10.06□□□□□ -0.8
TRIM28-214ENST00000600840 ZBBXA8MT70 800 aa10.06□□□□□ -0.8
TRIM28-214ENST00000600840 DHX16O60231 1041 aaKnown RBP10.06□□□□□ -0.8
TRIM28-214ENST00000600840 ZEB2O60315 1214 aa10.06□□□□□ -0.8
TRIM28-214ENST00000600840 PPFIA3O75145 1194 aa10.06□□□□□ -0.8
TRIM28-214ENST00000600840 CA3P07451 260 aa10.06□□□□□ -0.8
TRIM28-214ENST00000600840 TXNP10599 105 aaKnown RBP10.06□□□□□ -0.8
TRIM28-214ENST00000600840 NHLH1Q02575 133 aa10.06□□□□□ -0.8
TRIM28-214ENST00000600840 PWP2Q15269 919 aaKnown RBP10.06□□□□□ -0.8
TRIM28-214ENST00000600840 NPY5RQ15761 445 aa10.06□□□□□ -0.8
TRIM28-214ENST00000600840 PFKFB3Q16875 520 aaPredicted RBP10.06□□□□□ -0.8
TRIM28-214ENST00000600840 SEPT14Q6ZU15 432 aa10.06□□□□□ -0.8
TRIM28-214ENST00000600840 FBXO11Q86XK2 927 aa10.06□□□□□ -0.8
TRIM28-214ENST00000600840 INTS4Q96HW7 963 aaKnown RBP10.06□□□□□ -0.8
TRIM28-214ENST00000600840 ZFP91Q96JP5 570 aaPredicted RBP10.06□□□□□ -0.8
TRIM28-214ENST00000600840 AIFM3Q96NN9 605 aa10.06□□□□□ -0.8
TRIM28-214ENST00000600840 UIMC1Q96RL1 719 aa10.06□□□□□ -0.8
TRIM28-214ENST00000600840 MTIF3Q9H2K0 278 aaKnown RBP10.06□□□□□ -0.8
TRIM28-214ENST00000600840 PCDHA11Q9Y5I1 949 aa10.06□□□□□ -0.8
TRIM28-214ENST00000600840 SLC4A7Q9Y6M7 1214 aa10.06□□□□□ -0.8
TRIM28-214ENST00000600840 BDP1A6H8Y1 2624 aa10.06□□□□□ -0.8
TRIM28-214ENST00000600840 PTPRSQ13332 1948 aa10.05□□□□□ -0.8
TRIM28-214ENST00000600840 A6NJR5 290 aa10.05□□□□□ -0.8
TRIM28-214ENST00000600840 STXBP3O00186 592 aa10.05□□□□□ -0.8
TRIM28-214ENST00000600840 ADAMTS3O15072 1205 aa10.05□□□□□ -0.8
TRIM28-214ENST00000600840 GTPBP6O43824 516 aaPredicted RBP10.05□□□□□ -0.8
TRIM28-214ENST00000600840 RGS20O76081 388 aa10.05□□□□□ -0.8
TRIM28-214ENST00000600840 CFBP00751 764 aa10.05□□□□□ -0.8
TRIM28-214ENST00000600840 ATP2A2P16615 1042 aaKnown RBP10.05□□□□□ -0.8
TRIM28-214ENST00000600840 EIF2AK2P19525 551 aaKnown RBP10.05□□□□□ -0.8
TRIM28-214ENST00000600840 ARHGAP1Q07960 439 aa10.05□□□□□ -0.8
TRIM28-214ENST00000600840 WWC2Q6AWC2 1192 aa10.05□□□□□ -0.8
TRIM28-214ENST00000600840 SCFD2Q8WU76 684 aa10.05□□□□□ -0.8
TRIM28-214ENST00000600840 AFG1LQ8WV93 481 aa10.05□□□□□ -0.8
TRIM28-214ENST00000600840 HLA-CQ95604 372 aa10.05□□□□□ -0.8
TRIM28-214ENST00000600840 CTAGE1Q96RT6 745 aa10.05□□□□□ -0.8
TRIM28-214ENST00000600840 RMDN3Q96TC7 470 aa10.05□□□□□ -0.8
TRIM28-214ENST00000600840 MTG1Q9BT17 334 aaPredicted RBP10.05□□□□□ -0.8
TRIM28-214ENST00000600840 POLR3EQ9NVU0 708 aa10.05□□□□□ -0.8
TRIM28-214ENST00000600840 NAP1L2Q9ULW6 460 aaPredicted RBP10.05□□□□□ -0.8
TRIM28-214ENST00000600840 COG5Q9UP83 839 aa10.05□□□□□ -0.8
TRIM28-214ENST00000600840 DOCK5Q9H7D0 1870 aa10.04□□□□□ -0.8
TRIM28-214ENST00000600840 PRR33A8MZF0 331 aa10.04□□□□□ -0.8
TRIM28-214ENST00000600840 NKRFO15226 690 aaKnown RBP eCLIP10.04□□□□□ -0.8
TRIM28-214ENST00000600840 SORBS3O60504 671 aa10.04□□□□□ -0.8
TRIM28-214ENST00000600840 SCG2P13521 617 aa10.04□□□□□ -0.8
TRIM28-214ENST00000600840 POU3F3P20264 500 aaPredicted RBP10.04□□□□□ -0.8
TRIM28-214ENST00000600840 HOXA13P31271 388 aaPredicted RBP10.04□□□□□ -0.8
TRIM28-214ENST00000600840 CPT1AP50416 773 aa10.04□□□□□ -0.8
TRIM28-214ENST00000600840 HSD17B4P51659 736 aa10.04□□□□□ -0.8
TRIM28-214ENST00000600840 SSRP1Q08945 709 aaKnown RBP10.04□□□□□ -0.8
TRIM28-214ENST00000600840 TTLL4Q14679 1199 aa10.04□□□□□ -0.8
TRIM28-214ENST00000600840 IL31RAQ8NI17 732 aa10.04□□□□□ -0.8
TRIM28-214ENST00000600840 NSUN6Q8TEA1 469 aaKnown RBP10.04□□□□□ -0.8
TRIM28-214ENST00000600840 ARNTL2Q8WYA1 636 aa10.04□□□□□ -0.8
TRIM28-214ENST00000600840 KAT2BQ92831 832 aa10.04□□□□□ -0.8
TRIM28-214ENST00000600840 GPKOWQ92917 476 aaPredicted RBP eCLIP10.04□□□□□ -0.8
TRIM28-214ENST00000600840 RRP36Q96EU6 259 aaKnown RBP10.04□□□□□ -0.8
TRIM28-214ENST00000600840 AMNQ9BXJ7 453 aa10.04□□□□□ -0.8
TRIM28-214ENST00000600840 SLC26A6Q9BXS9 759 aa10.04□□□□□ -0.8
TRIM28-214ENST00000600840 BCAS3Q9H6U6 928 aa10.04□□□□□ -0.8
TRIM28-214ENST00000600840 PXMP2Q9NR77 195 aa10.04□□□□□ -0.8
TRIM28-214ENST00000600840 GJB4Q9NTQ9 266 aa10.04□□□□□ -0.8
TRIM28-214ENST00000600840 BARHL2Q9NY43 387 aa10.04□□□□□ -0.8
TRIM28-214ENST00000600840 ORC3Q9UBD5 711 aaPredicted RBP10.04□□□□□ -0.8
TRIM28-214ENST00000600840 PNMA2Q9UL42 364 aa10.04□□□□□ -0.8
TRIM28-214ENST00000600840 MRPL11Q9Y3B7 192 aaKnown RBP10.04□□□□□ -0.8
TRIM28-214ENST00000600840 CHD7Q9P2D1 2997 aa10.04□□□□□ -0.8
TRIM28-214ENST00000600840 M0R2N6 131 aa10.03□□□□□ -0.8
TRIM28-214ENST00000600840 CPLX1O14810 134 aa10.03□□□□□ -0.8
TRIM28-214ENST00000600840 DEXIO95424 95 aa10.03□□□□□ -0.8
TRIM28-214ENST00000600840 NR3C2P08235 984 aa10.03□□□□□ -0.8
TRIM28-214ENST00000600840 MMP3P08254 477 aa10.03□□□□□ -0.8
TRIM28-214ENST00000600840 DDIT3P35638 169 aa10.03□□□□□ -0.8
TRIM28-214ENST00000600840 CHMP4BP1P59074 171 aa10.03□□□□□ -0.8
TRIM28-214ENST00000600840 SP2Q02086 613 aa10.03□□□□□ -0.8
TRIM28-214ENST00000600840 GRB10Q13322 594 aa10.03□□□□□ -0.8
TRIM28-214ENST00000600840 GPNMBQ14956 572 aa10.03□□□□□ -0.8
TRIM28-214ENST00000600840 STXBP2Q15833 593 aa10.03□□□□□ -0.8
TRIM28-214ENST00000600840 FAM47CQ5HY64 1035 aa10.03□□□□□ -0.8
TRIM28-214ENST00000600840 ARHGEF16Q5VV41 709 aa10.03□□□□□ -0.8
TRIM28-214ENST00000600840 GDF6Q6KF10 455 aaPredicted RBP10.03□□□□□ -0.8
TRIM28-214ENST00000600840 DEFB128Q7Z7B8 93 aa10.03□□□□□ -0.8
TRIM28-214ENST00000600840 HOMER1Q86YM7 354 aa10.03□□□□□ -0.8
TRIM28-214ENST00000600840 PIBF1Q8WXW3 757 aa10.03□□□□□ -0.8
TRIM28-214ENST00000600840 FBXL18Q96ME1 805 aa10.03□□□□□ -0.8
TRIM28-214ENST00000600840 TANC1Q9C0D5 1861 aa10.03□□□□□ -0.8
TRIM28-214ENST00000600840 MAF1Q9H063 256 aa10.03□□□□□ -0.8
TRIM28-214ENST00000600840 SH3GLB2Q9NR46 395 aa10.03□□□□□ -0.8
TRIM28-214ENST00000600840 DDX41Q9UJV9 622 aaKnown RBP10.03□□□□□ -0.8
TRIM28-214ENST00000600840 PCDHA1Q9Y5I3 950 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms