RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 MUM1L1Q5H9M0 696 aa10.79□□□□□ -0.68
TRIM28-208ENST00000597172 MCTP1Q6DN14 999 aa10.79□□□□□ -0.68
TRIM28-208ENST00000597172 SNRNP48Q6IEG0 339 aaKnown RBP10.79□□□□□ -0.68
TRIM28-208ENST00000597172 GALNT17Q6IS24 598 aa10.79□□□□□ -0.68
TRIM28-208ENST00000597172 FAM173BQ6P4H8 233 aa10.79□□□□□ -0.68
TRIM28-208ENST00000597172 OTOP2Q7RTS6 562 aa10.79□□□□□ -0.68
TRIM28-208ENST00000597172 DPP9Q86TI2 863 aa10.79□□□□□ -0.68
TRIM28-208ENST00000597172 BLIDQ8IZY5 108 aa10.79□□□□□ -0.68
TRIM28-208ENST00000597172 CCDC148Q8NFR7 591 aa10.79□□□□□ -0.68
TRIM28-208ENST00000597172 CCDC12Q8WUD4 166 aaPredicted RBP10.79□□□□□ -0.68
TRIM28-208ENST00000597172 TNPO1Q92973 898 aaKnown RBP10.79□□□□□ -0.68
TRIM28-208ENST00000597172 CHAMP1Q96JM3 812 aa10.79□□□□□ -0.68
TRIM28-208ENST00000597172 TRERF1Q96PN7 1200 aa10.79□□□□□ -0.68
TRIM28-208ENST00000597172 FOXP1Q9H334 677 aaPredicted RBP10.79□□□□□ -0.68
TRIM28-208ENST00000597172 PSTPIP2Q9H939 334 aa10.79□□□□□ -0.68
TRIM28-208ENST00000597172 C6orf50Q9HD87 102 aa10.79□□□□□ -0.68
TRIM28-208ENST00000597172 FAM86C1Q9NVL1 165 aa10.79□□□□□ -0.68
TRIM28-208ENST00000597172 PCDHA6Q9UN73 950 aa10.79□□□□□ -0.68
TRIM28-208ENST00000597172 MRPL11Q9Y3B7 192 aaKnown RBP10.79□□□□□ -0.68
TRIM28-208ENST00000597172 RABGAP1Q9Y3P9 1069 aa10.79□□□□□ -0.68
TRIM28-208ENST00000597172 CTDP1Q9Y5B0 961 aaPredicted RBP10.79□□□□□ -0.68
TRIM28-208ENST00000597172 PCDHA8Q9Y5H6 950 aa10.79□□□□□ -0.68
TRIM28-208ENST00000597172 SLC4A7Q9Y6M7 1214 aa10.79□□□□□ -0.68
TRIM28-208ENST00000597172 FAM205CA6NFA0 338 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 NFIBO00712 420 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 PGK1P00558 417 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 RARBP10826 455 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 IL9P15248 144 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 GNA11P29992 359 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 ADCY7P51828 1080 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 MRPL12P52815 198 aaKnown RBP10.78□□□□□ -0.68
TRIM28-208ENST00000597172 TRAF1Q13077 416 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 SAFBQ15424 915 aaKnown RBP eCLIP10.78□□□□□ -0.68
TRIM28-208ENST00000597172 UBE2SQ16763 222 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 LEXMQ3ZCV2 418 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 USP17L6PQ6QN14 398 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 RIOX2Q8IUF8 465 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.78□□□□□ -0.68
TRIM28-208ENST00000597172 RASGRP4Q8TDF6 673 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 ARNTL2Q8WYA1 636 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 MOV10L1Q9BXT6 1211 aaKnown RBP10.78□□□□□ -0.68
TRIM28-208ENST00000597172 TEX13BQ9BXU2 312 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 PPP1R12CQ9BZL4 782 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 SPATC1LQ9H0A9 340 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 ZSCAN16Q9H4T2 348 aaPredicted RBP10.78□□□□□ -0.68
TRIM28-208ENST00000597172 UBE2ZQ9H832 354 aaPredicted RBP10.78□□□□□ -0.68
TRIM28-208ENST00000597172 STARD7Q9NQZ5 370 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 TMEM260Q9NX78 707 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 PNMA2Q9UL42 364 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 CEP250Q9BV73 2442 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 MYH6P13533 1939 aa10.78□□□□□ -0.68
TRIM28-208ENST00000597172 FAM208BQ5VWN6 2430 aa10.77□□□□□ -0.68
TRIM28-208ENST00000597172 PIK3CDO00329 1044 aa10.77□□□□□ -0.69
TRIM28-208ENST00000597172 EDIL3O43854 480 aa10.77□□□□□ -0.69
TRIM28-208ENST00000597172 TOB1P50616 345 aaPredicted RBP10.77□□□□□ -0.69
TRIM28-208ENST00000597172 GHRHRQ02643 423 aa10.77□□□□□ -0.69
TRIM28-208ENST00000597172 GRB10Q13322 594 aa10.77□□□□□ -0.69
TRIM28-208ENST00000597172 PLS1Q14651 629 aa10.77□□□□□ -0.69
TRIM28-208ENST00000597172 TKFCQ3LXA3 575 aa10.77□□□□□ -0.69
TRIM28-208ENST00000597172 JAKMIP3Q5VZ66 844 aa10.77□□□□□ -0.69
TRIM28-208ENST00000597172 PTCRAQ6ISU1 281 aaPredicted RBP10.77□□□□□ -0.69
TRIM28-208ENST00000597172 NOSTRINQ8IVI9 506 aa10.77□□□□□ -0.69
TRIM28-208ENST00000597172 BICD2Q8TD16 824 aa10.77□□□□□ -0.69
TRIM28-208ENST00000597172 CUL5Q93034 780 aa10.77□□□□□ -0.69
TRIM28-208ENST00000597172 COL26A1Q96A83 441 aa10.77□□□□□ -0.69
TRIM28-208ENST00000597172 HOMER2Q9NSB8 354 aa10.77□□□□□ -0.69
TRIM28-208ENST00000597172 MYO15AQ9UKN7 3530 aa10.76□□□□□ -0.69
TRIM28-208ENST00000597172 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.76□□□□□ -0.69
TRIM28-208ENST00000597172 CFBP00751 764 aa10.76□□□□□ -0.69
TRIM28-208ENST00000597172 CA3P07451 260 aa10.76□□□□□ -0.69
TRIM28-208ENST00000597172 ATP2A2P16615 1042 aaKnown RBP10.76□□□□□ -0.69
TRIM28-208ENST00000597172 KCNA5P22460 613 aa10.76□□□□□ -0.69
TRIM28-208ENST00000597172 HOXA13P31271 388 aaPredicted RBP10.76□□□□□ -0.69
TRIM28-208ENST00000597172 CYP2C18P33260 490 aa10.76□□□□□ -0.69
TRIM28-208ENST00000597172 HSD17B4P51659 736 aa10.76□□□□□ -0.69
TRIM28-208ENST00000597172 ACLYP53396 1101 aa10.76□□□□□ -0.69
TRIM28-208ENST00000597172 FOXD4L6Q3SYB3 417 aaPredicted RBP10.76□□□□□ -0.69
TRIM28-208ENST00000597172 FOXD4L3Q6VB84 417 aaPredicted RBP10.76□□□□□ -0.69
TRIM28-208ENST00000597172 PIK3AP1Q6ZUJ8 805 aa10.76□□□□□ -0.69
TRIM28-208ENST00000597172 BRAPQ7Z569 592 aa10.76□□□□□ -0.69
TRIM28-208ENST00000597172 CHST13Q8NET6 341 aa10.76□□□□□ -0.69
TRIM28-208ENST00000597172 ATOH1Q92858 354 aaPredicted RBP10.76□□□□□ -0.69
TRIM28-208ENST00000597172 PGBD1Q96JS3 809 aa10.76□□□□□ -0.69
TRIM28-208ENST00000597172 TSEN34Q9BSV6 310 aaKnown RBP10.76□□□□□ -0.69
TRIM28-208ENST00000597172 GLT8D2Q9H1C3 349 aa10.76□□□□□ -0.69
TRIM28-208ENST00000597172 BRMS1Q9HCU9 246 aa10.76□□□□□ -0.69
TRIM28-208ENST00000597172 RNF146Q9NTX7 359 aa10.76□□□□□ -0.69
TRIM28-208ENST00000597172 MROH7Q68CQ1 1323 aa10.76□□□□□ -0.69
TRIM28-208ENST00000597172 GPR179Q6PRD1 2367 aa10.75□□□□□ -0.69
TRIM28-208ENST00000597172 ZNF292O60281 2723 aa10.75□□□□□ -0.69
TRIM28-208ENST00000597172 COL11A1P12107 1806 aaPredicted RBP10.75□□□□□ -0.69
TRIM28-208ENST00000597172 CFAP47Q6ZTR5 3102 aa10.75□□□□□ -0.69
TRIM28-208ENST00000597172 GRXCR2A6NFK2 248 aa10.75□□□□□ -0.69
TRIM28-208ENST00000597172 GCOM1H8Y6P7 765 aaPredicted RBP10.75□□□□□ -0.69
TRIM28-208ENST00000597172 WNT7AO00755 349 aa10.75□□□□□ -0.69
TRIM28-208ENST00000597172 SLC25A27O95847 323 aa10.75□□□□□ -0.69
TRIM28-208ENST00000597172 POLR2MP0CAP2 368 aa10.75□□□□□ -0.69
TRIM28-208ENST00000597172 ERCC3P19447 782 aa10.75□□□□□ -0.69
TRIM28-208ENST00000597172 ADORA2AP29274 412 aa10.75□□□□□ -0.69
TRIM28-208ENST00000597172 DNM1Q05193 864 aaKnown RBP10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms