RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 WDR59Q6PJI9 974 aa21.87■■□□□ 1.09
CLIP3-206ENST00000593074 POTEGQ6S5H5 508 aa21.87■■□□□ 1.09
CLIP3-206ENST00000593074 POTEEQ6S8J3 1075 aa21.87■■□□□ 1.09
CLIP3-206ENST00000593074 CATSPER3Q86XQ3 398 aa21.87■■□□□ 1.09
CLIP3-206ENST00000593074 MICALL2Q8IY33 904 aa21.87■■□□□ 1.09
CLIP3-206ENST00000593074 TEPSINQ96N21 525 aa21.87■■□□□ 1.09
CLIP3-206ENST00000593074 CHP1Q99653 195 aa21.87■■□□□ 1.09
CLIP3-206ENST00000593074 TSG101Q99816 390 aa21.87■■□□□ 1.09
CLIP3-206ENST00000593074 IRX2Q9BZI1 471 aaPredicted RBP21.87■■□□□ 1.09
CLIP3-206ENST00000593074 FEM1BQ9UK73 627 aa21.87■■□□□ 1.09
CLIP3-206ENST00000593074 VAV3Q9UKW4 847 aa21.87■■□□□ 1.09
CLIP3-206ENST00000593074 BRCA1P38398 1863 aaKnown RBP21.87■■□□□ 1.09
CLIP3-206ENST00000593074 FZD9O00144 591 aa21.87■■□□□ 1.09
CLIP3-206ENST00000593074 MSH4O15457 936 aa21.87■■□□□ 1.09
CLIP3-206ENST00000593074 MAN2A1Q16706 1144 aa21.87■■□□□ 1.09
CLIP3-206ENST00000593074 VWA3BQ502W6 1294 aa21.87■■□□□ 1.09
CLIP3-206ENST00000593074 CCDC174Q6PII3 467 aa21.87■■□□□ 1.09
CLIP3-206ENST00000593074 GLIS2Q9BZE0 524 aaPredicted RBP21.87■■□□□ 1.09
CLIP3-206ENST00000593074 CNOT7Q9UIV1 285 aaKnown RBP21.87■■□□□ 1.09
CLIP3-206ENST00000593074 SMCHD1A6NHR9 2005 aa21.86■■□□□ 1.09
CLIP3-206ENST00000593074 IGLV3-22A0A075B6J6 115 aa21.86■■□□□ 1.09
CLIP3-206ENST00000593074 NDUFA10O95299 355 aa21.86■■□□□ 1.09
CLIP3-206ENST00000593074 SPATA31C1P0DKV0 1188 aa21.86■■□□□ 1.09
CLIP3-206ENST00000593074 KLK7P49862 253 aa21.86■■□□□ 1.09
CLIP3-206ENST00000593074 ZBED6P86452 979 aa21.86■■□□□ 1.09
CLIP3-206ENST00000593074 LRRC41Q15345 812 aa21.86■■□□□ 1.09
CLIP3-206ENST00000593074 SAMD7Q7Z3H4 446 aa21.86■■□□□ 1.09
CLIP3-206ENST00000593074 ZNF397Q8NF99 534 aaPredicted RBP21.86■■□□□ 1.09
CLIP3-206ENST00000593074 EPN1Q9Y6I3 576 aaPredicted RBP21.86■■□□□ 1.09
CLIP3-206ENST00000593074 TADA3O75528 432 aa21.86■■□□□ 1.09
CLIP3-206ENST00000593074 ARHGAP25P42331 645 aa21.86■■□□□ 1.09
CLIP3-206ENST00000593074 ERCC6LQ2NKX8 1250 aa21.86■■□□□ 1.09
CLIP3-206ENST00000593074 TSR1Q2NL82 804 aaKnown RBP21.86■■□□□ 1.09
CLIP3-206ENST00000593074 KIF4BQ2VIQ3 1234 aa21.86■■□□□ 1.09
CLIP3-206ENST00000593074 ARHGAP29Q52LW3 1261 aa21.86■■□□□ 1.09
CLIP3-206ENST00000593074 NCAPH2Q6IBW4 605 aa21.86■■□□□ 1.09
CLIP3-206ENST00000593074 NDST4Q9H3R1 872 aa21.86■■□□□ 1.09
CLIP3-206ENST00000593074 AGPAT5Q9NUQ2 364 aa21.86■■□□□ 1.09
CLIP3-206ENST00000593074 ARSHQ5FYA8 562 aa21.85■■□□□ 1.09
CLIP3-206ENST00000593074 CCDC84Q86UT8 332 aaPredicted RBP21.85■■□□□ 1.09
CLIP3-206ENST00000593074 MNS1Q8NEH6 495 aa21.85■■□□□ 1.09
CLIP3-206ENST00000593074 FEZ1Q99689 392 aa21.85■■□□□ 1.09
CLIP3-206ENST00000593074 SIK3Q9Y2K2 1263 aa21.85■■□□□ 1.09
CLIP3-206ENST00000593074 REXO2Q9Y3B8 237 aaKnown RBP21.85■■□□□ 1.09
CLIP3-206ENST00000593074 TBC1D10BQ4KMP7 808 aaPredicted RBP21.84■■□□□ 1.09
CLIP3-206ENST00000593074 SLF1Q9BQI6 1058 aa21.84■■□□□ 1.09
CLIP3-206ENST00000593074 CARD6Q9BX69 1037 aa21.84■■□□□ 1.09
CLIP3-206ENST00000593074 FGFBP2Q9BYJ0 223 aa21.84■■□□□ 1.09
CLIP3-206ENST00000593074 ZNF341Q9BYN7 854 aa21.84■■□□□ 1.09
CLIP3-206ENST00000593074 MYO1AQ9UBC5 1043 aa21.84■■□□□ 1.09
CLIP3-206ENST00000593074 MRPL11Q9Y3B7 192 aaKnown RBP21.84■■□□□ 1.09
CLIP3-206ENST00000593074 NPHP3-ACAD11A0A0J9YXS1 232 aa21.84■■□□□ 1.09
CLIP3-206ENST00000593074 EFCAB8A8MWE9 144 aa21.84■■□□□ 1.09
CLIP3-206ENST00000593074 CYP2W1Q8TAV3 490 aa21.84■■□□□ 1.09
CLIP3-206ENST00000593074 GINM1Q9NU53 330 aa21.84■■□□□ 1.09
CLIP3-206ENST00000593074 HACL1Q9UJ83 578 aa21.84■■□□□ 1.09
CLIP3-206ENST00000593074 GCOM1H8Y6P7 765 aaPredicted RBP21.83■■□□□ 1.09
CLIP3-206ENST00000593074 CFBP00751 764 aa21.83■■□□□ 1.09
CLIP3-206ENST00000593074 POLR2MP0CAP2 368 aa21.83■■□□□ 1.09
CLIP3-206ENST00000593074 PRELPP51888 382 aa21.83■■□□□ 1.09
CLIP3-206ENST00000593074 FKBP3Q00688 224 aaKnown RBP21.83■■□□□ 1.09
CLIP3-206ENST00000593074 SAMD1Q6SPF0 538 aaPredicted RBP21.83■■□□□ 1.09
CLIP3-206ENST00000593074 KCTD17Q8N5Z5 321 aa21.83■■□□□ 1.09
CLIP3-206ENST00000593074 SYT2Q8N9I0 419 aaPredicted RBP21.83■■□□□ 1.09
CLIP3-206ENST00000593074 POLR3CQ9BUI4 534 aaPredicted RBP21.83■■□□□ 1.09
CLIP3-206ENST00000593074 DNM3Q9UQ16 869 aa21.83■■□□□ 1.09
CLIP3-206ENST00000593074 ATAD5Q96QE3 1844 aa21.83■■□□□ 1.08
CLIP3-206ENST00000593074 ZNF76P36508 570 aa21.83■■□□□ 1.08
CLIP3-206ENST00000593074 PTGER2P43116 358 aa21.83■■□□□ 1.08
CLIP3-206ENST00000593074 CDK17Q00537 523 aa21.83■■□□□ 1.08
CLIP3-206ENST00000593074 HERC4Q5GLZ8 1057 aaPredicted RBP21.83■■□□□ 1.08
CLIP3-206ENST00000593074 FBXO38Q6PIJ6 1188 aa21.83■■□□□ 1.08
CLIP3-206ENST00000593074 CEP63Q96MT8 703 aa21.83■■□□□ 1.08
CLIP3-206ENST00000593074 FBXO28Q9NVF7 368 aa21.83■■□□□ 1.08
CLIP3-206ENST00000593074 CTNND1O60716 968 aaKnown RBP21.82■■□□□ 1.08
CLIP3-206ENST00000593074 KIF20AO95235 890 aa21.82■■□□□ 1.08
CLIP3-206ENST00000593074 PSMC6P62333 389 aa21.82■■□□□ 1.08
CLIP3-206ENST00000593074 ZNF569Q5MCW4 686 aa21.82■■□□□ 1.08
CLIP3-206ENST00000593074 ZC3H3Q8IXZ2 948 aaKnown RBP21.82■■□□□ 1.08
CLIP3-206ENST00000593074 SCFD1Q8WVM8 642 aa21.82■■□□□ 1.08
CLIP3-206ENST00000593074 PCMTD1Q96MG8 357 aaPredicted RBP21.82■■□□□ 1.08
CLIP3-206ENST00000593074 WDR18Q9BV38 432 aa21.82■■□□□ 1.08
CLIP3-206ENST00000593074 DEFB129Q9H1M3 183 aa21.82■■□□□ 1.08
CLIP3-206ENST00000593074 KCTD10Q9H3F6 313 aa21.82■■□□□ 1.08
CLIP3-206ENST00000593074 ZNHIT6Q9NWK9 470 aaKnown RBP21.82■■□□□ 1.08
CLIP3-206ENST00000593074 COL4A3BPQ9Y5P4 624 aa21.82■■□□□ 1.08
CLIP3-206ENST00000593074 ASTN2O75129 1339 aaPredicted RBP21.82■■□□□ 1.08
CLIP3-206ENST00000593074 RBBP6Q7Z6E9 1792 aaKnown RBP21.82■■□□□ 1.08
CLIP3-206ENST00000593074 ABL1P00519 1130 aa21.81■■□□□ 1.08
CLIP3-206ENST00000593074 CACNB1Q02641 598 aaPredicted RBP21.81■■□□□ 1.08
CLIP3-206ENST00000593074 PPP2R3AQ06190 1150 aa21.81■■□□□ 1.08
CLIP3-206ENST00000593074 TBC1D5Q92609 795 aa21.81■■□□□ 1.08
CLIP3-206ENST00000593074 TBC1D7Q9P0N9 293 aa21.81■■□□□ 1.08
CLIP3-206ENST00000593074 KRT18P05783 430 aaKnown RBP21.81■■□□□ 1.08
CLIP3-206ENST00000593074 H2AFXP16104 143 aaPredicted RBP21.81■■□□□ 1.08
CLIP3-206ENST00000593074 HNRNPH3P31942 346 aaKnown RBP21.81■■□□□ 1.08
CLIP3-206ENST00000593074 MARSP56192 900 aaKnown RBP21.81■■□□□ 1.08
CLIP3-206ENST00000593074 PABPC4Q13310 644 aaKnown RBP eCLIP21.81■■□□□ 1.08
CLIP3-206ENST00000593074 GIT2Q14161 759 aa21.81■■□□□ 1.08
CLIP3-206ENST00000593074 ZNF662Q6ZS27 426 aa21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms